--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GALAXY_FILES/test-data/EMBER/targets_1-1.txt	Wed Feb 29 15:03:33 2012 -0500
@@ -0,0 +1,974 @@
+0610037L13Rik
+0610037M15Rik,H2-gs10
+1110003E01Rik
+1110032A03Rik,LOC100048251
+1110059E24Rik
+1300014I06Rik
+1500035H01Rik
+1700030K09Rik
+1700106N22Rik
+1810031K17Rik
+2010011I20Rik
+2310033F14Rik,LOC100046056,Pbxip1
+2310044G17Rik
+2310045N01Rik
+2310046K01Rik
+2410001C21Rik
+2510049I19Rik
+2810403A07Rik
+2810474O19Rik
+4632428N05Rik
+4833420G17Rik
+4930523C07Rik
+4933426M11Rik
+4933437F05Rik
+5033414D02Rik
+5730469M10Rik
+6330442E10Rik
+6430527G18Rik
+9030617O03Rik
+9130019O22Rik,E430018J23Rik,Zfp747,Zfp764
+9130227C08Rik
+9130404D08Rik
+A230067G21Rik
+A430107D22Rik
+A630033E08Rik
+AI316807
+AI467606
+AW549877
+Abhd12
+Abhd14b
+Ablim1
+Abtb2
+Acaa1a,Acaa1b
+Acot5
+Acp6
+Acvr1b
+Adam19,LOC100045780
+Adck2
+Adrb2
+Adrbk1
+Aff4
+Afmid
+Aftph
+Agpat2
+Ahnak
+Akap13
+Akap7
+Akap8l
+Akt3
+Aldh2
+Amdhd2
+Ammecr1l
+Ankrd11
+Ankrd44
+Antxr2
+Ap1m1
+Ap3d1
+Apobec2
+Arf6
+Arhgap15
+Arhgap17
+Arhgap25
+Arhgap26
+Arhgap30
+Arhgap9
+Arhgef1
+Arhgef11
+Arhgef3
+Arid1b
+Arid5a
+Arl4a
+Arnt
+Arpc5l
+Asap1
+Atf6
+Atf7ip
+Atg16l1
+Atg4b
+Atp2a3
+Atp6v0a1
+Atxn2,LOC100047323
+Axin1,LOC100047927
+Azi2
+B230312A22Rik
+B3gnt2
+B3gnt8
+B430306N03Rik
+B4galt1
+B4galt3
+B630005N14Rik
+BC004004
+BC013712
+BC017643
+BC028528
+BC032203
+Bahd1
+Bak1
+Bank1
+Bat5
+Baz1a
+Bcas3
+Bckdha
+Bcl10
+Bcl11a
+Bcl2
+Bcl3
+Bcl6
+Bend5
+Bhlhe40
+Bin1
+Bin3
+Blk
+Blvrb
+Bmp2k
+Bptf
+Brap
+Bri3
+Bri3bp
+Brwd1
+Btg2
+Btla
+C030046E11Rik
+C030048B08Rik
+C130039O16Rik
+C78339
+C87436
+Cab39
+Calhm2
+Camk2d
+Capn7
+Casp9
+Cbfa2t3
+Ccdc23
+Ccdc93
+Ccnd3
+Ccnt1
+Ccr1
+Ccr6
+Ccr7
+Cd19
+Cd2
+Cd200
+Cd37
+Cd38
+Cd47
+Cd53
+Cd69
+Cd74
+Cd79b
+Cd81
+Cd84
+Cdc37l1
+Cdc42se1
+Cdkal1
+Cdyl2
+Cep57
+Cep97
+Chchd10
+Chd3
+Chd7
+Chrac1
+Chsy1,LOC100047167
+Cib1
+Cirbp
+Ciz1
+Ckap4
+Clcf1
+Clec2i
+Clk3
+Cln5
+Clta
+Cltc
+Cmah
+Cmtm6
+Cmtm7
+Cnksr3
+Cnn2
+Cnn3,LOC100047856
+Cnot6l
+Cnot8
+Cnp
+Cnr2
+Cnrip1
+Cobll1
+Copg2
+Coro1a
+Coro1b
+Cpm
+Cr1l
+Cr2
+Crbn
+Creb1
+Crk
+Crlf3
+Crybg3
+Cryzl1
+Csk
+Csnk1g2
+Csnk1g3
+Ctdp1
+Ctps2
+Ctsa
+Ctsc
+Ctsh
+Ctso
+Ctss
+Cugbp2
+Cul7
+Cux1
+Cxcr5
+Cxxc5
+Cyba
+Cybb
+Cyp4f18,LOC100044439
+Cyp4v3
+Cyth2
+Cyth4
+Cytip
+Cytsa
+D1Ertd622e
+D2Ertd391e
+D330012F22Rik
+D930015E06Rik
+Dapp1
+Daxx
+Dbndd2
+Dbp
+Dcaf8
+Ddhd1
+Ddit4
+Ddx17
+Ddx54
+Ddx6
+Dedd2
+Dennd3
+Dennd4b
+Depdc6
+Dgkd
+Dguok
+Dhodh
+Dhx40
+Dhx57
+Diras2
+Dlat
+Dnajb2
+Dnajb5
+Dnajc4
+Dnmt3a
+Dock2
+Dopey2
+Dpp4
+Dpy19l3
+Dtx1
+Dtx3l
+Dusp4
+Dusp6
+Ebf1
+Edaradd
+Efha2
+Egr3
+Ehd1
+Eif1b
+Eif2ak3,LOC100047634
+Eif2c1
+Eif2c2
+Eif2c4
+Eif3f
+Eif4e3
+Eif4h
+Elk3
+Ell3
+Emid1
+Eno3
+Ensa
+Entpd1
+Epc2
+Eps15l1
+Eps8
+Eps8,LOC632638
+Ern1
+Erp29
+Errfi1
+Ets1
+Etv3
+Evi2a
+Evi2a,Evi2b
+Evi2b
+Evi5
+Evl
+Evl,LOC100047333
+Exoc2
+Exoc6
+Ezh1
+Ezr
+Faim3
+Fam102a
+Fam102b
+Fam107b
+Fam108a
+Fam108b
+Fam134c
+Fam167a
+Fam168b
+Fam26f
+Fam43a
+Fam49b
+Fam53a
+Fam54b
+Fam55b
+Fam63a
+Fam65b
+Fam69a
+Fam76b
+Fbxl17
+Fbxl3
+Fbxl3,LOC100044862
+Fbxl4
+Fbxo25
+Fbxo4
+Fcer2a
+Fcgr2b
+Fcgrt
+Fcho1
+Fcrl1
+Fcrla
+Fermt3
+Fgd2
+Fgfr1op
+Filip1l
+Fli1
+Fndc3a
+Foxj2
+Foxk1
+Foxo1
+Foxp1
+Fth1
+Fuca1
+Fuca2
+Fyco1
+Gad1
+Gadd45a
+Galnt1
+Galnt10
+Gatad2a
+Gatsl2
+Gbp2
+Gbp6
+Gcap14
+Gcnt1
+Gfi1
+Gfod1
+Ggta1
+Gimap1
+Gimap3,LOC100044538
+Gimap4
+Gimap5
+Gimap6
+Gimap7
+Gimap8
+Gimap9
+Glt25d1
+Gm12528
+Gm15531,Gm4180,Gm4525,Rps27
+Gm5805,Rps14
+Gm608
+Gm9844,LOC100048142,Tmsb10
+Gmip
+Gna11
+Gna13
+Gnal1
+Gns
+Golga5
+Gosr1
+Gpbp1
+Gpi1
+Gpr146
+Gpr171
+Gpr18
+Gpr183
+Gpr19
+Gpr65
+Gpsm3
+Grap2,LOC674050
+Gsk3b
+Gsn
+Gypc
+H2-Aa
+H2-Ab1
+H2-D1
+H2-D1,H2-K1,LOC100044874
+H2-DMa
+H2-DMb1,H2-DMb2
+H2-DMb2
+H2-Eb1
+H2-Eb2
+H2-K1
+H2-Ke6
+H2-Oa
+H2-Ob
+H2-T10,H2-T17,H2-T22,H2-T9
+H2afj
+H3f3b
+H47
+Haao
+Hacl1
+Hcfc1r1
+Hcls1
+Hdac11
+Heatr6
+Hepacam2
+Herc4
+Hes1
+Hexa
+Hhex
+Hif1a
+Hip1r
+Hist1h1c
+Hist2h2be
+Hivep2
+Hlcs
+Hltf
+Hmg20a
+Hmgcl
+Hmha1
+Hps3
+Hpse
+Hs3st1
+Hsdl1
+Hsdl2
+Hspb11
+Hvcn1
+Icam2
+Icosl
+Ier5
+Ifnar1
+Ifnar2
+Ifngr1
+Ifngr2
+Il10ra
+Il10rb
+Il16
+Il17ra
+Il18
+Il4ra
+Il6st
+Il7r
+Ing5
+Inpp5d
+Inpp5e
+Inpp5f
+Inpp5k
+Invs
+Ip6k2
+Iqgap1
+Iqsec1
+Irf2
+Irf3
+Irf4
+Irf5
+Irgm2
+Isg20l2
+Itm2b
+Itpkb
+Itpr1
+Itpr2
+Itsn2
+Ivd
+Jak2
+Jakmip1
+Jarid2
+Jhdm1d
+Jmjd1c
+Kbtbd11
+Kctd12
+Kdm2a
+Kdm5b
+Kdsr
+Kif21b
+Klf11
+Klf13
+Klf2
+Klf3,LOC100046855
+Klf6
+Klf7
+Klhdc1
+Klhdc5
+Klhl14
+Klhl22
+Klhl24
+Klhl25
+Klrc2,Klrc3
+Kras
+Krba1
+Kremen1
+Kynu
+LOC100044395,Rbpms
+LOC100045163,Plbd1
+LOC100046056,Pbxip1
+LOC100046168,Ndfip1
+LOC100047324,Sesn1
+LOC100047484,Stxbp3a
+LOC100047588,Mark3
+LOC100048105,Ubc
+LOC100048642,Snx5
+LOC676654,Lyn
+Lactb
+Lamp1
+Laptm4a
+Lass4
+Lats2
+Lbh
+Lclat1
+Leng9
+Lgals3
+Lgals8
+Limd1
+Limd2
+Lime1
+Limk1
+Lmo2
+Lpar6
+Lpgat1
+Lpin1
+Lrmp
+Lrrc28
+Lrrc33
+Lrrc61
+Lsp1
+Lst1
+Ltb
+Ly6a
+Ly6e
+Ly86
+Lyrm5
+Lztfl1
+Macf1
+Macrod1
+Magi3
+Malt1
+Man1a
+Man2b1
+Manba
+Map3k12
+Map3k14
+Map3k3
+Map3k8
+Map4k2
+Map4k4
+Mapk14
+Mapk8
+March7
+Mast3
+Mbp
+Mbtps1
+Mcl1
+Mctp2
+Mdfic
+Mef2c
+Mepce
+Mfap1a
+Mff
+Mfhas1
+Mgrn1
+Mgst2
+Mical1
+Midn
+Mif4gd
+Mkl1
+Mkl2
+Mknk2
+Mll1
+Mllt6
+Mmp11
+Mnt
+Morc3
+Morf4l1
+Mosc2
+Mpa2l
+Ms4a1
+Ms4a4c
+Mta3
+Mterfd3
+Mtss1
+Mxi1
+Myadm
+Mybpc2
+Myh9
+Mylip
+Myo1c
+Myo1e
+Myst1
+N4bp2l1
+Nadsyn1
+Naga
+Naglu
+Napsa
+Ncf4
+Nckipsd
+Ncoa1
+Ndrg1
+Ndst1
+Nedd4l
+Nedd9
+Nek7
+Neu3
+Neurl2
+Neurl3
+Nfatc3
+Nfia
+Nfkb1
+Nfkbia
+Nfkbid
+Ngrn
+Nipal3
+Nipsnap1
+Nod1
+Npc2
+Nr3c1
+Nr4a1
+Nucb2
+Nxnl2
+Obfc2a
+Osbpl5
+Osbpl7
+Osbpl9
+Osgep
+Ostf1
+P2rx4
+Pafah1b1
+Parp1
+Parp11
+Parp3
+Parp6
+Patz1
+Pbx2
+Pcif1
+Pck2
+Pcmt1
+Pcnxl3
+Pcp4
+Pdcd1lg2
+Pdcd2
+Pde4b
+Pde7a
+Pdlim2
+Pex6
+Pfkfb3
+Pfkl
+Pgap1
+Pgm2l1
+Phc2
+Phf20
+Phf20l1
+Pias3
+Pigv
+Pik3ap1
+Pik3ca
+Pik3cg
+Pip4k2a
+Pitpna
+Pkib
+Plac8
+Plaur
+Plcl2
+Pld3
+Pld4
+Plec1
+Plek
+Plekha1
+Plekha2
+Plekhb2
+Plekhf2
+Plekhg2
+Plekho1
+Pml
+Pnrc2
+Pold4
+Pot1b
+Ppap2b
+Ppil4
+Ppm1m
+Ppp1r12a
+Ppp1r13b
+Ppp3ca
+Ppp4r1
+Ppt1
+Prcp
+Prdx5
+Prepl
+Prkcb
+Prpf40b
+Prr13
+Psap
+Psen2
+Pskh1
+Pten
+Ptger4
+Ptp4a2
+Ptpn12
+Ptprcap
+Puf60
+Pum2
+Pvrl4
+Pxn
+Pyhin1
+Rab11a
+Rab31
+Rab33b
+Rab37
+Rabac1
+Rabep2
+Rabgap1l
+Rad9
+Ralgps2
+Rap1b
+Rapgef4
+Rasa3
+Rasal1
+Rasgef1b
+Rasgrp3
+Rassf3
+Rassf5
+Rbm39
+Rbm43
+Rbx1
+Rchy1
+Recql5
+Rela
+Rest
+Rfx5
+Rg9mtd1
+Rgl1
+Rgl2
+Rgs3
+Rhbdf2
+Rhobtb2
+Rhoh
+Rin3
+Ripk2
+Rnasel
+Rnf122
+Rnf13
+Rnf139
+Rnf145
+Rnf166
+Rnf167
+Rnf169
+Rnf2
+Rnf216
+Rnf31
+Rpgrip1
+Rph3al
+Rpl13a
+Rpl13a,Zfp526
+Rpl14
+Rpl37
+Rplp1
+Rprd2
+Rps27
+Rsu1
+Runx1
+Rxrb
+S100a10
+S100a11
+S1pr1
+S1pr4
+Samd9l
+Sbk1
+Scai
+Scarb2
+Sdc1
+Sdc4
+Sdf2
+Sec16b
+Sec22c
+Sell
+Sema4b
+Serf2
+Serinc1
+Serpinb1a
+Serpini1
+Sertad1
+Sertad2
+Sesn3
+Setd2
+Sf3b1
+Sft2d1
+Sgms1
+Sh3bp5
+Sidt1
+Siglecg
+Sipa1
+Ski
+Skil
+Sla
+Slc12a6
+Slc2a1
+Slc2a3
+Slc30a1
+Slc37a2
+Slc38a2
+Slc38a9
+Slu7
+Smad7
+Smo
+Smpdl3a
+Snap29
+Snn
+Snrk
+Snx18
+Snx2
+Snx5
+Socs3
+Socs5
+Sod1
+Son
+Sorl1
+Sp1
+Spib
+Spin1
+Spns1
+Spns2
+Spns3
+Sppl3
+Srpk2
+Ssbp2
+Ssh2
+St3gal1
+St3gal6
+St6gal1
+St8sia4
+Stambpl1
+Stat1
+Stat4
+Stk24
+Stk4
+Stoml1
+Stx17
+Stx2
+Sub1
+Syk
+Sys1
+Syt11
+Taf8
+Tap1
+Tbc1d10c
+Tbcel
+Tcf25
+Tcf4
+Tcp11l2
+Tead2
+Tec
+Tecpr1
+Tep1
+Tet2
+Tfdp2
+Tgs1
+Tha1
+Tia1
+Tinf2
+Tle3
+Tlr1
+Tlr2
+Tlr3
+Tm6sf1
+Tm7sf3
+Tmbim6
+Tmc6
+Tmcc3
+Tmem123
+Tmem127
+Tmem134
+Tmem2
+Tmem219
+Tmem55b
+Tmem60
+Tmem80
+Tmem86a
+Tmsb4x
+Tnfaip3
+Tnfaip8l2
+Tnfrsf13b
+Tnrc6b
+Tnrc6c
+Tom1l2
+Top2b
+Tpd52
+Tpst2
+Traf5
+Traf6
+Trak2
+Trem1
+Treml2
+Trib2
+Trim14
+Trim24
+Trim25
+Trim47
+Trim7
+Trio
+Trit1
+Trp53i13
+Trp53inp1
+Trpv2
+Tsc22d4
+Tspan14
+Tspan32
+Tspo
+Ttc33
+Ttyh2
+Twf2
+Txndc16
+Tyrobp
+Ubac2
+Ubc
+Ube2b
+Ubr3
+Uckl1
+Ucp2
+Ugcg
+Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9
+Unc13d
+Unc93b1
+Usp21
+Usp3
+Usp7
+Vav1
+Vav2
+Vcl
+Vezf1
+Vgll4
+Vps33a
+Vps37b
+Wdfy2
+Wdr26
+Wsb1
+Yeats4
+Yipf4
+Ypel5
+Zbtb22
+Zbtb9
+Zcchc2
+Zdhhc13
+Zdhhc14
+Zdhhc17
+Zeb2
+Zfp143
+Zfp236
+Zfp238
+Zfp28
+Zfp354b
+Zfp397
+Zfp507
+Zfp592
+Zfp608
+Zfp617
+Zfp764
+Zfp775
+Zfp78
+Zfyve27
+Zmat2
+Zmynd11
+Znrf2
+Zswim6