# HG changeset patch
# User mmaiensc
# Date 1332439631 14400
# Node ID e960969a92ae18615b90dce1005937aafb298a9a
# Parent  037c3edda16ef04e5a38f8ca70d7ba6c73a574d5
Uploaded

diff -r 037c3edda16e -r e960969a92ae GALAXY_FILES/tools/EMBER/Compare_Targets.xml
--- a/GALAXY_FILES/tools/EMBER/Compare_Targets.xml	Thu Mar 22 13:49:52 2012 -0400
+++ b/GALAXY_FILES/tools/EMBER/Compare_Targets.xml	Thu Mar 22 14:07:11 2012 -0400
@@ -38,7 +38,7 @@
 
 Description of inputs:
 
-*Targets files 1 and 2*: the .targets outputs of EMBER (lines start with "PEAK:" or "TGENE:").
+*Targets files 1 and 2*: the target outputs of EMBER (lines start with "PEAK:" or "TGENE:").
 
 *Output type*: This tool compares the gene sets, and you can choose which comparison to print, either the intersection, difference, or union.
 
diff -r 037c3edda16e -r e960969a92ae GALAXY_FILES/tools/EMBER/Expression_Pattern_Distance.xml
--- a/GALAXY_FILES/tools/EMBER/Expression_Pattern_Distance.xml	Thu Mar 22 13:49:52 2012 -0400
+++ b/GALAXY_FILES/tools/EMBER/Expression_Pattern_Distance.xml	Thu Mar 22 14:07:11 2012 -0400
@@ -25,7 +25,7 @@
 
 Description of inputs:
 
-*Model files 1 and 2*: the .model output EMBER (first line is "comparison/class; avg...")
+*Model files 1 and 2*: the model output of EMBER (first line is "comparison/class; avg...")
 
   </help>
 
diff -r 037c3edda16e -r e960969a92ae GALAXY_FILES/tools/EMBER/Make_Logo.xml
--- a/GALAXY_FILES/tools/EMBER/Make_Logo.xml	Thu Mar 22 13:49:52 2012 -0400
+++ b/GALAXY_FILES/tools/EMBER/Make_Logo.xml	Thu Mar 22 14:07:11 2012 -0400
@@ -29,7 +29,7 @@
 
 Description of inputs:
 
-*Model file*: the .model output EMBER (first line is "comparison/class; avg...")
+*Model file*: the model output of EMBER (first line is "comparison/class; avg...")
 
 *Comparison list*: the same comparison list input to PreProcess Expression Data (used to make plot labels).
 
diff -r 037c3edda16e -r e960969a92ae GALAXY_FILES/tools/EMBER/PreProcess_Expression_Data.xml
--- a/GALAXY_FILES/tools/EMBER/PreProcess_Expression_Data.xml	Thu Mar 22 13:49:52 2012 -0400
+++ b/GALAXY_FILES/tools/EMBER/PreProcess_Expression_Data.xml	Thu Mar 22 14:07:11 2012 -0400
@@ -52,7 +52,7 @@
 
 *Comparison List*:
 
-   List of behavior dimension definitions. [condition] should match the names in the expression data list.
+   List of behavior dimension definitions. [condition] should match the names in the expression data title line.
 
    *Format (2 columns)*: [condition1] [condition2]