--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Mon Jul 04 09:51:51 2016 -0400
@@ -0,0 +1,69 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="0.4_1">r-snow</requirement>
+            <requirement type="package" version="1.0">r-probmetab</requirement>
+            <requirement type="package" version="1.1_4">r-batch</requirement>
+        </requirements>
+    </xml>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1" level="fatal" />
+        </stdio>
+    </xml>
+
+    <token name="@COMMAND_CAMERA_SCRIPT@">
+        LANG=C Rscript $__tool_directory__/probmetab.r
+    </token>
+    
+    <!-- zipfile load for planemo test -->
+    <token name="@COMMAND_ZIPFILE_LOAD@">
+        #if $zipfile_load_conditional.zip_file:
+        zipfile $zipfile_load_conditional.zip_file
+        #end if
+    </token>
+    <xml name="zipfile_load">
+        <conditional name="zipfile_load_conditional">
+            <param name="zipfile_load_select" type="select" label="Resubmit your zip file" help="Use only if you get a message which say that your original zip file have been deleted on the server." >
+                <option value="no" >no need</option>
+                <option value="yes" selected="peakgroups">yes</option>
+            </param>
+            <when value="no">
+            </when>
+            <when value="yes">
+                <param name="zip_file" type="data" format="no_unzip.zip,zip" label="Zip file" />
+            </when>
+        </conditional>
+    </xml>
+    
+    <token name="@HELP_AUTHORS@">
+.. class:: infomark
+
+**Authors** Ricardo R. Silva et al. (2013) rsilvabioinfo@usp.br
+
+ | If you use this tool, please cite: Silva RR and al.(2010). ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics..
+ | For details about this tool, please go to http://labpib.fmrp.usp.br/methods/probmetab/
+
+.. class:: infomark
+
+**Galaxy integration** Misharl Monsoor misharl.monsoor@sb-roscoff.fr ABIMS TEAM, Station biologique de Roscoff.
+
+ | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool.
+
+.. class:: infomark
+
+**Contributors**  Ricardo R. Silva rsilvabioinfo@usp.br, Yann Guitton yann.guitton@univ-nantes.fr and Jean-François Martin jean-francois.martin@toulouse.inra.fr
+
+---------------------------------------------------
+
+    </token>
+
+
+    <xml name="citation">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/btu019</citation>
+            <citation type="doi">10.1093/bioinformatics/btu813</citation>
+        </citations>
+    </xml>
+</macros>