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1 <tool id="autocor-acf" name="Autocorrelation test" version="0.1">
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2 <description>check for temporal autocorrelation in the residuals</description>
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3 <requirements>
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4 <requirement type="package" version="3.1_131">r-nlme</requirement>
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5 <requirement type="package" version="7.3_48">r-mass</requirement>
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6 <requirement type="package" version="0.9.10">xorg-libxrender</requirement>
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7 <requirement type="package" version="1.1.2">xorg-libsm</requirement>
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8 </requirements>
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9 <command detect_errors="exit_code"><![CDATA[
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10 Rscript '$__tool_directory__/autocorr-res_acf.R' '$input1' '$output' ]]>
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11 </command>
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12 <inputs>
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13 <param format="rdata" name="input1" type="data" label="gls model" help="Rdata file"/>
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14 </inputs>
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15 <outputs>
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16 <data format="png" name="output" from_work_dir="output-acf.png" />
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17 </outputs>
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18 <tests>
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19 <test>
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20 <param name="input1" value="mod1"/>
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21 <param output="output" value="res.png"/>
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22 </test>
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23 </tests>
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24
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25 <help><![CDATA[
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26
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27 .. class:: infomark
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28
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29 ======================================
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30 Model residuals autocorrelation check
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31 /bin/bash: :wq: command not found
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32
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33 This tool is an implementation of the autocorr-res_acf function from RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/
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34 This function uses a simple linear model and explore for temporal autocorrelation that we will account in the final model.
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35 ]]></help>
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36 <citations>
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37 <citation type="doi">10.1111/1365-2664.12561</citation>
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38 </citations>
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39 </tool>
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