Mercurial > repos > mnhn65mo > regionalgam

annotate flight_curve.R @ 2:0e7066603eab draft default tip

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author mnhn65mo
date Mon, 06 Aug 2018 04:45:49 -0400
parents 5b126f770671
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1 #!/usr/bin/env Rscript
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2 #library('getopt')
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3 #library(devtools)
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5 args = commandArgs(trailingOnly=TRUE)
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6 source(args[1]) #TODO replace by library(regionalGAM) if available as official package from bioconda
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8 tryCatch({input = read.table(args[2], header=TRUE,sep=" ")},finally={input = read.table(args[2], header=TRUE,sep=",")})
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9 dataset1 <- input[,c("SPECIES","SITE","YEAR","MONTH","DAY","COUNT")]
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10 pheno <- flight_curve(dataset1)
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12 write.table(pheno, file="pheno", row.names=FALSE, sep=" ")