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1 <tool id="gls" name="Model temporal trend" version="0.1">
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2 <description>with a simple linear regression</description>
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3 <requirements>
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4 <requirement type="package" version="3.1_131">r-nlme</requirement>
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5 <requirement type="package" version="7.3_48">r-mass</requirement>
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6 </requirements>
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7 <command detect_errors="exit_code"><![CDATA[
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8 Rscript '$__tool_directory__/gls.R' '$input1' '$input2' '$output' '$output2' ]]>
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9 </command>
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10 <inputs>
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11 <param name="input1" type="data" format="tabular" label="File generated by the glmmpql/Expected temporal trend tool"/>
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12 <param name="input2" type="data" format="tabular" label="File generated by the outil ab_index tool"/>
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13 </inputs>
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14 <outputs>
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15 <data format="txt" name="output" from_work_dir="mod-summary.txt" />
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16 <data format="rdata" name="output2" from_work_dir="mod.rda" />
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17 </outputs>
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18 <tests>
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19 <test> <!--FAILED for binary-->
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20 <param name="input1" value="glmmpql.tabular"/>
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21 <param name="input2" value="data_index.tabular"/>
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22 <output name="output" value="gls_sum.txt"/>
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23 <output name="output2" value="gls_rda.rda"/>
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24 </test>
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25 </tests>
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26 <help><![CDATA[
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27
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28 .. class:: infomark
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29
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30 ==========================
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31 Model temporal trend
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32 ==========================
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33
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34 This tool is an implementation of the gls function from RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/
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35 This function model temporal trend with a simple linear regression.
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36
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37 ]]></help>
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38 <citations>
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39 <citation type="doi">10.1111/1365-2664.12561</citation>
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40 </citations>
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41 </tool>
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