Mercurial > repos > mnhn65mo > regionalgam
comparison autocorr-res_acf_en.xml @ 0:5b126f770671 draft
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| author | mnhn65mo |
|---|---|
| date | Fri, 03 Aug 2018 08:28:22 -0400 |
| parents | |
| children | b8fa05dbcff4 |
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| -1:000000000000 | 0:5b126f770671 |
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| 1 <tool id="autocor-acf" name="Autocorrelation test" version="0.1"> | |
| 2 <description>check for temporal autocorrelation in the residuals</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="3.1_131">r-nlme</requirement> | |
| 5 <requirement type="package" version="7.3_48">r-mass</requirement> | |
| 6 <requirement type="package" version="0.9.10">xorg-libxrender</requirement> | |
| 7 <requirement type="package" version="1.1.2">xorg-libsm</requirement> | |
| 8 </requirements> | |
| 9 <command detect_errors="exit_code"><![CDATA[ | |
| 10 Rscript '$__tool_directory__/autocorr-res_acf.R' '$input1' '$output' ]]> | |
| 11 </command> | |
| 12 <inputs> | |
| 13 <param format="rdata" name="input1" type="data" label="gls model" help="Rdata file"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="png" name="output" from_work_dir="output-acf.png" /> | |
| 17 </outputs> | |
| 18 <tests> | |
| 19 <test> | |
| 20 <param name="input1" value="mod1"/> | |
| 21 <param output="output" value="res.png"/> | |
| 22 </test> | |
| 23 </tests> | |
| 24 | |
| 25 <help><![CDATA[ | |
| 26 | |
| 27 .. class:: infomark | |
| 28 | |
| 29 ========================== | |
| 30 Model residuals autocorrelation check | |
| 31 ========================== | |
| 32 | |
| 33 This tool is an implementation of the autocorr-res_acf function from `RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/ | |
| 34 This function uses a simple linear model and explore for temporal autocorrelation that we will account in the final model. | |
| 35 ]]></help> | |
| 36 <citations> | |
| 37 <citation type="doi">10.1111/1365-2664.12561</citation> | |
| 38 </citations> | |
| 39 </tool> |