Mercurial > repos > mnhn65mo > regionalgam
comparison flight_curve_en.xml @ 0:5b126f770671 draft
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| author | mnhn65mo |
|---|---|
| date | Fri, 03 Aug 2018 08:28:22 -0400 |
| parents | |
| children | b8fa05dbcff4 |
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| -1:000000000000 | 0:5b126f770671 |
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| 1 <tool id="flight-curve" name="Flight curve"> | |
| 2 <description>compute the regional expected pattern of abundance</description> | |
| 3 <requirements> | |
| 4 <requirement type="package" version="3.4">r</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 Rscript '$__tool_directory__/flight_curve.R' '$__tool_directory__/dennis_gam_initial_functions.R' '$input' '$output' ]]> | |
| 8 </command> | |
| 9 <inputs> | |
| 10 <param format="tabular,csv" name="input" type="data" label="Count file" help="The file must contain the SPECIES, SITE, YEAR, MONTH, DAY and COUNT columns. CSV file separator ',' or tab."/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="tabular" name="output" from_work_dir="pheno" /> | |
| 14 </outputs> | |
| 15 <tests> | |
| 16 <test> <!--FAILED--> | |
| 17 <param name="input" value="gatekeeper_CM"/> | |
| 18 <output name="output" value="flight_curve_result.tabular"/> | |
| 19 </test> | |
| 20 </tests> | |
| 21 <help><![CDATA[ | |
| 22 | |
| 23 .. class:: infomark | |
| 24 | |
| 25 ========================== | |
| 26 Regional phenology | |
| 27 ========================== | |
| 28 | |
| 29 This tool is an implementation of the flight_curve function `RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/ | |
| 30 This function computes the annual phenology on a specific region. | |
| 31 | |
| 32 ]]></help> | |
| 33 <citations> | |
| 34 <citation type="doi">10.1111/1365-2664.12561</citation> | |
| 35 </citations> | |
| 36 </tool> |