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comparison gls_en.xml @ 0:5b126f770671 draft

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author mnhn65mo
date Fri, 03 Aug 2018 08:28:22 -0400
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1 <tool id="gls" name="Model temporal trend" version="0.1">
2 <description>with a simple linear regression</description>
3 <requirements>
4 <requirement type="package" version="3.1_131">r-nlme</requirement>
5 <requirement type="package" version="7.3_48">r-mass</requirement>
6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[
8 Rscript '$__tool_directory__/gls.R' '$input1' '$input2' '$output' '$output2' ]]>
9 </command>
10 <inputs>
11 <param name="input1" type="data" format="tabular" label="File generated by the glmmpql/Expected temporal trend tool"/>
12 <param name="input2" type="data" format="tabular" label="File generated by the outil ab_index tool"/>
13 </inputs>
14 <outputs>
15 <data format="txt" name="output" from_work_dir="mod-summary.txt" />
16 <data format="rdata" name="output2" from_work_dir="mod.rda" />
17 </outputs>
18 <tests>
19 <test> <!--FAILED for binary-->
20 <param name="input1" value="glmmpql.tabular"/>
21 <param name="input2" value="data_index.tabular"/>
22 <output name="output" value="gls_sum.txt"/>
23 <output name="output2" value="gls_rda.rda"/>
24 </test>
25 </tests>
26 <help><![CDATA[
27
28 .. class:: infomark
29
30 ==========================
31 Model temporal trend
32 ==========================
33
34 This tool is an implementation of the gls function from `RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/
35 This function model temporal trend with a simple linear regression.
36
37 ]]></help>
38 <citations>
39 <citation type="doi">10.1111/1365-2664.12561</citation>
40 </citations>
41 </tool>