Mercurial > repos > mnhn65mo > regionalgam
comparison plot_trend.R @ 0:5b126f770671 draft
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| author | mnhn65mo |
|---|---|
| date | Fri, 03 Aug 2018 08:28:22 -0400 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:5b126f770671 |
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| 1 #!/usr/bin/env Rscript | |
| 2 library(nlme) | |
| 3 library(MASS) | |
| 4 | |
| 5 args = commandArgs(trailingOnly=TRUE) | |
| 6 input = read.table(args[1], header=TRUE,sep=" ") #input=data.index =ab_index-output | |
| 7 load(args[2]) | |
| 8 | |
| 9 glmm.mod_fullyear <- glmmPQL(regional_gam~ as.factor(YEAR)-1,data=input,family=quasipoisson,random=~1|SITE, correlation = corAR1(form = ~ YEAR | SITE),verbose = FALSE) | |
| 10 | |
| 11 col.index <- as.numeric(glmm.mod_fullyear$coefficients$fixed) | |
| 12 year <- unique(input$YEAR) | |
| 13 | |
| 14 png('output-plot-trend.png') | |
| 15 plot(year,col.index, type='o',xlab="year",ylab="collated index") | |
| 16 abline(mod,lty=2,col="red") | |
| 17 dev.off() |