Mercurial > repos > mnhn65mo > regionalgam
view flight_curve_en.xml @ 2:0e7066603eab draft default tip
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author | mnhn65mo |
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date | Mon, 06 Aug 2018 04:45:49 -0400 |
parents | b8fa05dbcff4 |
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<tool id="flight-curve" name="Flight curve"> <description>compute the regional expected pattern of abundance</description> <requirements> <requirement type="package" version="3.4">r</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ Rscript '$__tool_directory__/flight_curve.R' '$__tool_directory__/dennis_gam_initial_functions.R' '$input' '$output' ]]> </command> <inputs> <param format="tabular,csv" name="input" type="data" label="Count file" help="The file must contain the SPECIES, SITE, YEAR, MONTH, DAY and COUNT columns. CSV file separator ',' or tab."/> </inputs> <outputs> <data format="tabular" name="output" from_work_dir="pheno" /> </outputs> <tests> <test> <!--FAILED--> <param name="input" value="gatekeeper_CM"/> <output name="output" value="flight_curve_result.tabular"/> </test> </tests> <help><![CDATA[ .. class:: infomark ========================== Regional phenology ========================== This tool is an implementation of the flight_curve function RegionalGAM package: https://github.com/RetoSchmucki/regionalGAM/ This function computes the annual phenology on a specific region. ]]></help> <citations> <citation type="doi">10.1111/1365-2664.12561</citation> </citations> </tool>