Mercurial > repos > modencode-dcc > bamedit

comparison tool_dependencies.xml @ 4:a4b7eb9c87d9 draft

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author modencode-dcc
date Fri, 18 Jan 2013 10:59:13 -0500
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3:1cea5a75f998 4:a4b7eb9c87d9
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment>
6 <package name="samtools" version="0.1.12">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tools/tool_shed_dependencies/bamedit/samtoolspkg.tar?raw=true</action>
10 <action type="shell_command">chmod ago+x samtools</action>
11 <action type="shell_command">chmod ago+x maq2sam-long</action>
12 <action type="move_file">
13 <source>samtools</source>
14 <destination>$INSTALL_DIR/bin</destination>
15 </action>
16 <action type="move_file">
17 <source>maq2sam-long</source>
18 <destination>$INSTALL_DIR/bin</destination>
19 </action>
20 <action type="set_environment">
21 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
22 </action>
23 </actions>
24 </install>
25 <readme>Compiling SAMtools requires the ncurses and zlib development libraries.</readme>
26 </package>
27 </tool_dependency>