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1 <!--
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2 Usage of THIS SCRIPT: ./idrPlotWrapper.sh em uri outputfile
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3 -->
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4
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5 <tool id="batch_consistency_plot" name="IDR-Plot">
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6 <requirements>
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7 <requirement type="set_environment">SCRIPT_PATH</requirement>
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8 </requirements>
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9 <description>Plot Consistency Analysis on IDR output files</description>
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10 <command interpreter="bash">idrPlotWrapper.sh $em $uri $outputfile \$SCRIPT_PATH</command>
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11 <inputs>
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12 <param name="uri" type="data" label="uri.sav file (output from IDR consistency analysis)"/>
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13 <param name="em" type="data" label="em.sav file (output from IDR consistency analysis)"/>
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14 </inputs>
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15 <outputs>
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16 <data format="pdf" name="outputfile" label="IDR-plot.pdf"/>
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17 </outputs>
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18
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19 <tests>
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20 <test>
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21 <!--
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22 <param name="input" value="fa_gc_content_input.fa"/>
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23 <output name="out_file1" file="fa_gc_content_output.txt"/>
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24 -->
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25 </test>
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26 </tests>
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27
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28 <help>
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29 Plots the correspondence curve and IDR threshold (i.e. number of selected peaks vs IDR) for each pair of samples.
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30 Uses the output of IDR consistency analysis and produces a downloadable PDF file containing the graphical analysis.
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31 This is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr.
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32 </help>
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33
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34 </tool>
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