Mercurial > repos > modencode-dcc > idr_package
comparison idrPlotDef.xml @ 17:70dc9bb76f92 draft
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| author | modencode-dcc |
|---|---|
| date | Mon, 21 Jan 2013 13:35:50 -0500 |
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| 16:012ce6d9ae15 | 17:70dc9bb76f92 |
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| 1 <!-- | |
| 2 Usage of THIS SCRIPT: ./idrPlotWrapper.sh em uri outputfile | |
| 3 --> | |
| 4 | |
| 5 <tool id="batch_consistency_plot" name="IDR-Plot"> | |
| 6 <requirements> | |
| 7 <requirement type="set_environment">SCRIPT_PATH</requirement> | |
| 8 </requirements> | |
| 9 <description>Plot Consistency Analysis on IDR output files</description> | |
| 10 <command interpreter="bash">idrPlotWrapper.sh $em $uri $outputfile \$SCRIPT_PATH</command> | |
| 11 <inputs> | |
| 12 <param name="uri" type="data" label="uri.sav file (output from IDR consistency analysis)"/> | |
| 13 <param name="em" type="data" label="em.sav file (output from IDR consistency analysis)"/> | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data format="pdf" name="outputfile" label="IDR-plot.pdf"/> | |
| 17 </outputs> | |
| 18 | |
| 19 <tests> | |
| 20 <test> | |
| 21 <!-- | |
| 22 <param name="input" value="fa_gc_content_input.fa"/> | |
| 23 <output name="out_file1" file="fa_gc_content_output.txt"/> | |
| 24 --> | |
| 25 </test> | |
| 26 </tests> | |
| 27 | |
| 28 <help> | |
| 29 Plots the correspondence curve and IDR threshold (i.e. number of selected peaks vs IDR) for each pair of samples. | |
| 30 Uses the output of IDR consistency analysis and produces a downloadable PDF file containing the graphical analysis. | |
| 31 This is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr. | |
| 32 </help> | |
| 33 | |
| 34 </tool> |