Mercurial > repos > modencode-dcc > idr_package
comparison idrPlotDef.xml @ 2:e7295ec4e750 draft
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| author | modencode-dcc |
|---|---|
| date | Thu, 17 Jan 2013 15:45:03 -0500 |
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| 1:c6bfb8bcff93 | 2:e7295ec4e750 |
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| 1 <!-- | |
| 2 Usage of THIS SCRIPT: ./idrPlotWrapper.sh em uri outputfile | |
| 3 --> | |
| 4 | |
| 5 <tool id="batch_consistency_plot" name="IDR-Plot"> | |
| 6 <description>Plot Consistency Analysis on IDR output files</description> | |
| 7 <command interpreter="bash">idrPlotWrapper.sh $em $uri $outputfile</command> | |
| 8 <inputs> | |
| 9 <param name="uri" type="data" label="uri.sav file (output from IDR consistency analysis)"/> | |
| 10 <param name="em" type="data" label="em.sav file (output from IDR consistency analysis)"/> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data format="pdf" name="outputfile" label="IDR-plot.pdf"/> | |
| 14 </outputs> | |
| 15 | |
| 16 <tests> | |
| 17 <test> | |
| 18 <!-- | |
| 19 <param name="input" value="fa_gc_content_input.fa"/> | |
| 20 <output name="out_file1" file="fa_gc_content_output.txt"/> | |
| 21 --> | |
| 22 </test> | |
| 23 </tests> | |
| 24 | |
| 25 <help> | |
| 26 Plots the correspondence curve and IDR threshold (i.e. number of selected peaks vs IDR) for each pair of samples. | |
| 27 Uses the output of IDR consistency analysis and produces a downloadable PDF file containing the graphical analysis. | |
| 28 This is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr. | |
| 29 </help> | |
| 30 | |
| 31 </tool> |