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1 <tool id="macs2npk" name="mac2npk">
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2 <description>Convert MACS output peak file to ENCODE narrowPeak format</description>
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3 <command interpreter="bash">macs2npk.sh $input1 $output1</command>
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4 <inputs>
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5 <param format="narrowPeak" name="input1" type="data" label="Input MACS peak file"/>
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6 </inputs>
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7 <outputs>
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8 <data format="txt" name="output1"/>
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9 </outputs>
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10 <tests>
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11 <test>
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12 <!--
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13 <param name="input" value="fa_gc_content_input.fa"/>
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14 <output name="out_file1" file="fa_gc_content_output.txt"/>
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15 -->
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16 </test>
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17 </tests>
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18 <help>
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19 Convert MACS output peak files ( _peaks.xls ) to ENCODE narrowPeak format ( http://genome.ucsc.edu/FAQ/FAQformat#format12 ). mac2npk is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr.
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20 </help>
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21 </tool>
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