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comparison macs2npk.xml @ 4:211849e90dd4 draft

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author modencode-dcc
date Fri, 18 Jan 2013 11:18:18 -0500
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3:72be1ab49f77 4:211849e90dd4
1 <tool id="macs2npk" name="mac2npk">
2 <description>Convert MACS output peak file to ENCODE narrowPeak format</description>
3 <command interpreter="bash">macs2npk.sh $input1 $output1</command>
4 <inputs>
5 <param format="narrowPeak" name="input1" type="data" label="Input MACS peak file"/>
6 </inputs>
7 <outputs>
8 <data format="txt" name="output1"/>
9 </outputs>
10 <tests>
11 <test>
12 <!--
13 <param name="input" value="fa_gc_content_input.fa"/>
14 <output name="out_file1" file="fa_gc_content_output.txt"/>
15 -->
16 </test>
17 </tests>
18 <help>
19 Convert MACS output peak files ( _peaks.xls ) to ENCODE narrowPeak format ( http://genome.ucsc.edu/FAQ/FAQformat#format12 ). mac2npk is a part of the IDR package. For more information about IDR, see https://sites.google.com/site/anshulkundaje/projects/idr.
20 </help>
21 </tool>