diff tool_dependencies.xml @ 5:9c9336e99ae8 draft

Uploaded
author modencode-dcc
date Fri, 18 Jan 2013 11:33:26 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jan 18 11:33:26 2013 -0500
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+ <?xml version="1.0"?>
+<tool_dependency>
+     3     <!--<set_environment version="1.0">
+     4         <environment_variable name="SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
+     5     </set_environment>-->
+     <package name="macs" version="1.4.1">
+         <install version="1.0">
+             <actions>
+                <action type="download_by_url">https://github.com/modENCODE-DCC/Galaxy/blob/master/tools/tool_shed_dependencies/macs/macs.tar?raw=true</action>
+                <action type="move_directory_files">
+                    <source_directory>bin</source_directory>
+                    <destination_directory>$INSTALL_DIR/bin</destination_directory>
+                </action>
+                <action type="move_directory_files">
+                    <source_directory>lib</source_directory>
+                    <destination_directory>$INSTALL_DIR/lib</destination_directory>
+                </action>
+                <action type="set_environment">
+                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                     <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python2.6/site-packages</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>Macs depends on having python2.6 installed on all nodes of the work cluster</readme>
+    </package>
+</tool_dependency>
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