Mercurial > repos > mpaya > epic2
comparison macros.xml @ 5:1f9b93f1a93f draft
update macros
| author | mpaya |
|---|---|
| date | Wed, 08 May 2019 10:10:34 -0400 |
| parents | |
| children |
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| 4:142310a198c2 | 5:1f9b93f1a93f |
|---|---|
| 1 <macros> | |
| 2 | |
| 3 <token name="@VERSION@">1.0</token> | |
| 4 <xml name="requirements"> | |
| 5 <requirements> | |
| 6 <requirement type="package" version="0.0.26">epic2</requirement> | |
| 7 <requirement type="package">htslib</requirement> | |
| 8 </requirements> | |
| 9 </xml> | |
| 10 | |
| 11 <xml name="effectiveGenomeSize"> | |
| 12 <param name="builtin_genome" argument="--genome" type="select" label="Genome" help="Default hg19 (--genome)" > | |
| 13 <option value="ailMel1">ailMel1</option> | |
| 14 <option value="anoCar2">anoCar2</option> | |
| 15 <option value="apiMel1">apiMel1</option> | |
| 16 <option value="aplCal1">aplCal1</option> | |
| 17 <option value="aquChr2">aquChr2</option> | |
| 18 <option value="balAcu1">balAcu1</option> | |
| 19 <option value="braFlo1">braFlo1</option> | |
| 20 <option value="calJac1">calJac1</option> | |
| 21 <option value="calJac3">calJac3</option> | |
| 22 <option value="cavPor3">cavPor3</option> | |
| 23 <option value="ce10">ce10</option> | |
| 24 <option value="ce11">ce11</option> | |
| 25 <option value="cerSim1">cerSim1</option> | |
| 26 <option value="chlSab2">chlSab2</option> | |
| 27 <option value="chrPic1">chrPic1</option> | |
| 28 <option value="danRer10">danRer10</option> | |
| 29 <option value="danRer3">danRer3</option> | |
| 30 <option value="danRer4">danRer4</option> | |
| 31 <option value="danRer5">danRer5</option> | |
| 32 <option value="danRer6">danRer6</option> | |
| 33 <option value="danRer7">danRer7</option> | |
| 34 <option value="dm3">dm3</option> | |
| 35 <option value="dm6">dm6</option> | |
| 36 <option value="echTel2">echTel2</option> | |
| 37 <option value="equCab1">equCab1</option> | |
| 38 <option value="equCab2">equCab2</option> | |
| 39 <option value="eriEur1">eriEur1</option> | |
| 40 <option value="eriEur2">eriEur2</option> | |
| 41 <option value="fr1">fr1</option> | |
| 42 <option value="fr2">fr2</option> | |
| 43 <option value="galVar1">galVar1</option> | |
| 44 <option value="gasAcu1">gasAcu1</option> | |
| 45 <option value="geoFor1">geoFor1</option> | |
| 46 <option value="gorGor3">gorGor3</option> | |
| 47 <option value="gorGor4">gorGor4</option> | |
| 48 <option value="gorGor5">gorGor5</option> | |
| 49 <option value="hetGla1">hetGla1</option> | |
| 50 <option value="hetGla2">hetGla2</option> | |
| 51 <option value="hg18">hg18</option> | |
| 52 <option value="hg19" selected="true">hg19</option> | |
| 53 <option value="hg38">hg38</option> | |
| 54 <option value="loxAfr3">loxAfr3</option> | |
| 55 <option value="macEug2">macEug2</option> | |
| 56 <option value="melGal1">melGal1</option> | |
| 57 <option value="melGal5">melGal5</option> | |
| 58 <option value="micMur2">micMur2</option> | |
| 59 <option value="mm10">mm10</option> | |
| 60 <option value="mm9">mm9</option> | |
| 61 <option value="monDom4">monDom4</option> | |
| 62 <option value="monDom5">monDom5</option> | |
| 63 <option value="myoLuc2">myoLuc2</option> | |
| 64 <option value="nanPar1">nanPar1</option> | |
| 65 <option value="nasLar1">nasLar1</option> | |
| 66 <option value="nomLeu1">nomLeu1</option> | |
| 67 <option value="nomLeu2">nomLeu2</option> | |
| 68 <option value="nomLeu3">nomLeu3</option> | |
| 69 <option value="ochPri3">ochPri3</option> | |
| 70 <option value="oreNil2">oreNil2</option> | |
| 71 <option value="ornAna1">ornAna1</option> | |
| 72 <option value="ornAna2">ornAna2</option> | |
| 73 <option value="oryCun2">oryCun2</option> | |
| 74 <option value="oryLat2">oryLat2</option> | |
| 75 <option value="oviAri1">oviAri1</option> | |
| 76 <option value="oviAri3">oviAri3</option> | |
| 77 <option value="papAnu2">papAnu2</option> | |
| 78 <option value="petMar1">petMar1</option> | |
| 79 <option value="petMar2">petMar2</option> | |
| 80 <option value="ponAbe2">ponAbe2</option> | |
| 81 <option value="priPac1">priPac1</option> | |
| 82 <option value="rheMac2">rheMac2</option> | |
| 83 <option value="rheMac3">rheMac3</option> | |
| 84 <option value="rheMac8">rheMac8</option> | |
| 85 <option value="rhiRox1">rhiRox1</option> | |
| 86 <option value="rn4">rn4</option> | |
| 87 <option value="rn5">rn5</option> | |
| 88 <option value="rn6">rn6</option> | |
| 89 <option value="sacCer1">sacCer1</option> | |
| 90 <option value="sacCer2">sacCer2</option> | |
| 91 <option value="sacCer3">sacCer3</option> | |
| 92 <option value="saiBol1">saiBol1</option> | |
| 93 <option value="sorAra2">sorAra2</option> | |
| 94 <option value="speTri2">speTri2</option> | |
| 95 <option value="strPur1">strPur1</option> | |
| 96 <option value="strPur2">strPur2</option> | |
| 97 <option value="susScr2">susScr2</option> | |
| 98 <option value="susScr3">susScr3</option> | |
| 99 <option value="taeGut1">taeGut1</option> | |
| 100 <option value="taeGut2">taeGut2</option> | |
| 101 <option value="tarSyr2">tarSyr2</option> | |
| 102 <option value="tetNig1">tetNig1</option> | |
| 103 <option value="tetNig2">tetNig2</option> | |
| 104 <option value="triMan1">triMan1</option> | |
| 105 <option value="xenTro3">xenTro3</option> | |
| 106 <option value="xenTro7">xenTro7</option> | |
| 107 </param> | |
| 108 </xml> | |
| 109 | |
| 110 <xml name="citations"> | |
| 111 <citations> | |
| 112 <citation type="doi">10.1093/bioinformatics/btz232</citation> | |
| 113 <yield /> | |
| 114 </citations> | |
| 115 </xml> | |
| 116 | |
| 117 </macros> |