Mercurial > repos > msjeon > abyss_tool

annotate abyss_toolsuite-92636934a189/abyss/abyss_wrapper.sh @ 0:ce99b6666d1f draft

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author msjeon
date Mon, 11 Jun 2012 14:48:15 -0400
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1 #!/bin/bash
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2
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3 if [ $# -ne 3 ]
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4 then
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5 echo "ERROR: Expected exactly 3 arguments; got: $*" 1>&2
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6 exit 1
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7 fi
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8
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9 CMD=`ABYSS -k$1 $2 -o $3 2>&1`
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10 if [ $? -ne 0 ]
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11 then
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12 {
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13 echo "COMMAND FAILURE: $CMD" 1>&2
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14 exit $?
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15 }
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16 fi