Mercurial > repos > msjeon > abyss_tool

comparison abyss_toolsuite-92636934a189/abyss/abyss_wrapper.sh @ 0:ce99b6666d1f draft

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author msjeon
date Mon, 11 Jun 2012 14:48:15 -0400
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-1:000000000000 0:ce99b6666d1f
1 #!/bin/bash
2
3 if [ $# -ne 3 ]
4 then
5 echo "ERROR: Expected exactly 3 arguments; got: $*" 1>&2
6 exit 1
7 fi
8
9 CMD=`ABYSS -k$1 $2 -o $3 2>&1`
10 if [ $? -ne 0 ]
11 then
12 {
13 echo "COMMAND FAILURE: $CMD" 1>&2
14 exit $?
15 }
16 fi