Mercurial > repos > msjeon > abyss_tool

diff abyss_toolsuite-92636934a189/abyss/abyss.xml @ 1:f1a33991bbbb draft default tip

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author msjeon
date Mon, 11 Jun 2012 15:53:09 -0400
parents ce99b6666d1f
children
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--- a/abyss_toolsuite-92636934a189/abyss/abyss.xml	Mon Jun 11 14:48:15 2012 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,25 +0,0 @@
-<tool id="abyss" name="Abyss" version="1.0.0">
-<description>Assemble short unpaired reads</description>
-<command interpreter='bash'>abyss_wrapper.sh $k $infile $outfile</command>
-
-<inputs>
-    <param name="infile" type="data" format="fasta|fastq" label="Unpaired read sequences" />
-    <param name="k" type="integer" value="41" label="K-mer size" help="Try multiple sizes, starting around 2/3 read length" />
-</inputs>
-
-<outputs>
-    <data name="outfile" format="fasta" />
-</outputs>
-
-<help>
-**What it does**
-
-ABySS is a de novo sequence assembler that is designed for short reads.
-
-.. image:: http://www.bcgsc.ca/platform/bioinfo/software/abyss/screenshot
-
-**Reference**
-
-http://www.bcgsc.ca/platform/bioinfo/software/abyss
-</help>
-</tool>