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view abyss_toolsuite-92636934a189/abyss/abyss_wrapper.sh @ 0:ce99b6666d1f draft

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author msjeon
date Mon, 11 Jun 2012 14:48:15 -0400
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#!/bin/bash

if [ $# -ne 3 ]
then
    echo "ERROR: Expected exactly 3 arguments; got: $*" 1>&2
    exit 1
fi

CMD=`ABYSS -k$1 $2 -o $3 2>&1`
if [ $? -ne 0 ]
then
{
    echo "COMMAND FAILURE: $CMD" 1>&2
    exit $?
}
fi