larch_athena: larch_athena.xml annotate

annotate larch_athena.xml @ 2:a1e26990131c draft

planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2

author	muon-spectroscopy-computational-project
date	Mon, 04 Mar 2024 11:43:19 +0000
parents	2b3115342fef
children	82e9dd980916

rev	line source
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	1 <tool id="larch_athena" name="Larch Athena" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@" python_template_version="3.5" profile="22.05" license="MIT">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	2 <description>generate Athena projects from XAFS data</description>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	3 <macros>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	4 <!-- version of underlying tool (PEP 440) -->
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	5 <token name="@TOOL_VERSION@">0.9.74</token>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	6 <!-- version of this tool wrapper (integer) -->
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	7 <token name="@WRAPPER_VERSION@">0</token>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	8 <!-- citation should be updated with every underlying tool version -->
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	9 <!-- typical fields to update are version, month, year, and doi -->
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	10 <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	11 <xml name="format">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	12 <param name="format" type="select" display="radio" label="Input format" help="Whether data is in plaintext or already saved as an Athena project">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	13 <option value="plaintext" selected="true">Plaintext</option>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	14 <option value="athena">Athena project</option>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	15 </param>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	16 </xml>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	17 <xml name="extract_group">
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	18 <conditional name="extract_group">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	19 <param name="extract_group" type="select" label="Group extraction" help="Method of handling group extraction. Extracting all or multiple named groups will result in multiple outputs, unless merging groups is also true.">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	20 <option value="single" selected="true">Extract single</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	21 <option value="multiple">Extract multiple</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	22 <option value="all">Extract all</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	23 </param>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	24 <when value="single">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	25 <param name="group_name" type="text" optional="true" label="Group label" help="Which group to extract and process from the Athena project (will use first group in file if unset)"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	26 </when>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	27 <when value="multiple">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	28 <repeat name="multiple" min="1" default="1" title="Groups">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	29 <param name="group_name" type="text" label="Group label" help="Which group to extract and process from the Athena project (will use first group in file if unset)"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	30 </repeat>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	31 </when>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	32 <when value="all"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	33 </conditional>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	34 </xml>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	35 <xml name="columns">
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	36 <param name="energy_column" type="text" optional="true" label="Energy column" help="If set, this column we be used as 'energy'. Otherwise, will identify the first column ending with 'energy' or labelled 'col1' 'Ef'."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	37 <param name="mu_column" type="text" optional="true" label="μ column" help="If set, this column we be used as 'mu'. Otherwise, will identify the first column labelled as either 'col2', 'xmu', 'lni0it', 'FFI0' or 'FF/I1'."/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	38 </xml>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	39 <xml name="is_zipped">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	40 <param name="is_zipped" type="select" display="radio" label="Inputs Zipped" help="Whether plaintext input files are zipped together into one directory, or not.">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	41 <option value="" selected="true">No</option>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	42 <option value="true">Yes</option>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	43 </param>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	44 </xml>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	45 <import>macros.xml</import>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	46 </macros>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	47 <creator>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	48 <person givenName="Patrick" familyName="Austin" url="https://github.com/patrick-austin" identifier="https://orcid.org/0000-0002-6279-7823"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	49 </creator>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	50 <requirements>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	51 <requirement type="package" version="@TOOL_VERSION@">xraylarch</requirement>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	52 <requirement type="package" version="3.5.2">matplotlib</requirement>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	53 <requirement type="package" version="3.0">zip</requirement>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	54 <requirement type="package" version="6.0">unzip</requirement>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	55 </requirements>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	56 <required_files>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	57 <include type="literal" path="larch_athena.py"/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	58 <include type="literal" path="common.py"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	59 </required_files>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	60 <command detect_errors="exit_code"><![CDATA[
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	61 mkdir prj edge flat derivative
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	62 #if $merge_inputs.format.format=="plaintext":
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	63 #if $merge_inputs.format.is_zipped.is_zipped=="true":
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	64 && echo Unzipping '$merge_inputs.format.is_zipped.dat_file.name'
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	65 && unzip '$merge_inputs.format.is_zipped.dat_file' -d dat_files
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	66 && python '${__tool_directory__}/larch_athena.py' dat_files '$inputs'
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	67 #else
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	68 && python '${__tool_directory__}/larch_athena.py' '$merge_inputs.format.is_zipped.dat_file' '$inputs'
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	69 #end if
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	70 #else
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	71 && python '${__tool_directory__}/larch_athena.py' '$merge_inputs.format.dat_file' '$inputs'
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	72 #end if
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	73 #if $zip_outputs:
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	74 && zip out_zip.zip prj/* edge/* flat/* derivative/*
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	75 #end if
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	76 ]]></command>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	77 <configfiles>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	78 <inputs name="inputs"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	79 </configfiles>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	80 <inputs>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	81 <conditional name="merge_inputs" >
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	82 <param name="merge_inputs" type="select" display="radio" label="Merge multiple inputs" help="Whether to merge all input data into one Athena project, by default each dataset or file in a zip will result in a separate output.">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	83 <option value="" selected="true">No</option>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	84 <option value="true">Yes</option>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	85 </param>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	86 <when value="">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	87 <conditional name="format" >
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	88 <expand macro="format"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	89 <when value="plaintext">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	90 <conditional name="is_zipped" >
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	91 <expand macro="is_zipped"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	92 <when value="">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	93 <param name="dat_file" type="data" format="h5,txt" label="XAFS data file" help="X-ray Absorption Fine Structure (XAFS) data, either in h5 or plaintext."/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	94 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	95 <when value="true">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	96 <param name="dat_file" type="data" format="zip" label="Zipped XAFS data files" help="Zipped X-ray Absorption Fine Structure (XAFS) data, either in h5 or plaintext."/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	97 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	98 </conditional>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	99 <expand macro="columns"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	100 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	101 <when value="athena">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	102 <param name="dat_file" type="data" format="prj" label="Athena project" help="X-ray Absorption Spectroscopy (XAS) data, in Athena project format"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	103 <expand macro="extract_group"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	104 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	105 </conditional>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	106 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	107 <when value="true">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	108 <conditional name="format" >
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	109 <expand macro="format"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	110 <when value="plaintext">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	111 <conditional name="is_zipped" >
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	112 <expand macro="is_zipped"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	113 <when value="">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	114 <param name="dat_file" type="data" format="h5,txt" multiple="true" label="XAFS data file" help="X-ray Absorption Fine Structure (XAFS) data, either in h5 or plaintext, which will be merged. Accepts individual files or a zip."/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	115 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	116 <when value="true">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	117 <param name="dat_file" type="data" format="zip" label="Zipped XAFS data files" help="Zipped X-ray Absorption Fine Structure (XAFS) data, either in h5 or plaintext. All files in the zip will be merged."/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	118 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	119 </conditional>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	120 <expand macro="columns"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	121 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	122 <when value="athena">
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	123 <param name="dat_file" type="data" format="prj" multiple="true" label="Athena project" help="X-ray Absorption Spectroscopy (XAS) data, which will be merged, in Athena project format. Note that when merging Athena groups, background parameters set in file will be lost, and automatic default used unless defined below."/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	124 <expand macro="extract_group"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	125 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	126 </conditional>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	127 </when>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	128 </conditional>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	129 <param name="annotation" type="text" label="Annotation" optional="true" help="If set, will annotate the output project(s) with this string. This will be used to generate legends when plotting data."/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	130 <section name="processing" expanded="true" title="Processing Options" help="By default, the following processing steps will be performed either with default values, or those contained in the input Athena project (if used). If specified here, these values will be used instead for process in sequence.">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	131 <conditional name="calibrate">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	132 <param name="calibrate" type="select" label="Calibrate energy" help="If set, will shift the spectrum so that its (automatically determined) edge occurs at the specified value, and any values outside the range will be discarded.">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	133 <option value="" selected="true">False</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	134 <option value="true">True</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	135 </param>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	136 <when value=""/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	137 <when value="true">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	138 <param name="calibration_e0" type="float" label="Calibration energy (eV)" optional="true" help="If set, data will be calibrated so that the edge occurs at this energy (after merging, if relevant). Note that this is different from specifying E0 in the pre-edge normalization, as this will the x-axis of the data (so that the Nth x point will no longer align with the Nth y point)."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	139 <param name="energy_min" type="float" label="Minimum energy (eV)" optional="true" help="If set, data will be cropped below this value in electron volts (after re-calibrating)."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	140 <param name="energy_max" type="float" label="Maximum energy (eV)" optional="true" help="If set, data will be cropped above this value in electron volts (after re-calibrating)."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	141 </when>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	142 </conditional>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	143 <param name="rebin" type="boolean" label="Re-bin data" help="Whether to re-bin along the energy axis to automatically ensure appropriate levels of precision in the pre-edge, near-edge and extended region of the spectrum."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	144 <conditional name="pre_edge">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	145 <param name="pre_edge" type="select" label="Pre-edge normalization" help="If set, will (re)perform forward pre-edge normalization using provided values.">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	146 <option value="" selected="true">False</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	147 <option value="true">True</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	148 </param>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	149 <when value=""/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	150 <when value="true">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	151 <param argument="e0" type="float" label="Edge energy (eV)" optional="true" help="If set, normalization will use this as the location of the edge rather than automatically determining it."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	152 <param argument="pre1" type="float" max="0" label="Pre-edge fit lower energy (eV)" optional="true" help="The lower end of the region used for the pre-edge fitting, relative to the edge energy (and therefore negative)."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	153 <param argument="pre2" type="float" max="0" label="Pre-edge fit upper energy (eV)" optional="true" help="The upper end of the region used for the pre-edge fitting, relative to the edge energy (and therefore negative)."/>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	154 <param argument="norm1" type="float" min="0" label="Post-edge fit lower energy (eV)" optional="true" help="The lower end of the region used for the post-edge fitting, relative to the edge energy (and therefore positive)."/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	155 <param argument="norm2" type="float" min="0" label="Post-edge fit upper energy (eV)" optional="true" help="The upper end of the region used for the post-edge fitting, relative to the edge energy (and therefore positive)."/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	156 <param argument="nnorm" type="integer" min="0" max="5" label="Post-edge fit polynomial degree" optional="true" help="The degree of the polynomial used to fit in the post-edge region."/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	157 <param argument="step" type="float" min="0" label="Edge step" optional="true" help="Magnitude of the step in μ between the pre and post-edge regions at the edge energy."/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	158 <param argument="nvict" type="integer" label="Energy exponent" optional="true" help="Edge fitting will be performed against μE*n where n is defined here. This is 0 by default."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	159 </when>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	160 </conditional>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	161 <conditional name="xftf">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	162 <param name="xftf" type="select" label="XFTF" help="If set, will (re)perform forward Fourier Transform using provided values.">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	163 <option value="" selected="true">False</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	164 <option value="true">True</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	165 </param>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	166 <when value=""/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	167 <when value="true">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	168 <param argument="kmin" type="float" optional="true" min="0.0" help="Minimum k value."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	169 <param argument="kmax" type="float" optional="true" min="0.0" help="Maximum k value."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	170 <param argument="kweight" type="float" optional="true" help="Exponent for weighting spectra by raising k to this power."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	171 <param argument="dk" type="float" optional="true" help="Tapering parameter for Fourier Transform window."/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	172 <param argument="window" type="select" optional="true" help="Fourier Transform window type.">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	173 <option value="hanning">Hanning (cosine-squared taper)</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	174 <option value="parzen">Parzen (linear taper)</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	175 <option value="welch">Welch (quadratic taper)</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	176 <option value="gaussian">Gaussian function window</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	177 <option value="sine">Sine function window</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	178 <option value="kaiser">Kaiser-Bessel function-derived window</option>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	179 </param>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	180 </when>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	181 </conditional>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	182 </section>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	183 <param name="plot_graph" type="boolean" label="Plot graph" help="Whether to plot the pre/post edge fitting and the normalised xμ data."/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	184 <param name="zip_outputs" type="boolean" label="Zip outputs" help="Whether to zip all outputs into one dataset."/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	185 </inputs>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	186 <outputs>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	187 <!-- Single output if zipping outputs -->
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	188 <data name="out_zip" format="zip" from_work_dir="out_zip.zip" label="Zipped Athena project(s) ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	189 <filter>zip_outputs</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	190 </data>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	191 <!-- Single outputs of different types if merging, or not using a zip -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	192 <data name="athena_project_file" format="prj" from_work_dir="prj/out.prj" label="Athena project ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	193 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	194 <filter>not (merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single")))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	195 </data>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	196 <data name="edge_plot" format="png" from_work_dir="edge/out.png" label="Edge fitting ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	197 <filter>plot_graph</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	198 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	199 <filter>not (merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single")))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	200 </data>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	201 <data name="flat_plot" format="png" from_work_dir="flat/out.png" label="Flattened plot ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	202 <filter>plot_graph</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	203 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	204 <filter>not (merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single")))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	205 </data>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	206 <data name="derivative_plot" format="png" from_work_dir="derivative/out.png" label="Derivative plot ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	207 <filter>plot_graph</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	208 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	209 <filter>not (merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single")))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	210 </data>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	211 <!-- Directories of outputs if using single, non-merged zip as input or extracting multiple/all Athena groups -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	212 <collection name="athena_project_file_collection" format="prj" type="list" label="Athena projects ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	213 <discover_datasets pattern="__name_and_ext__" directory="prj"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	214 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	215 <filter>merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single"))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	216 </collection>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	217 <collection name="edge_plot_collection" format="png" type="list" label="Edge fittings ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	218 <discover_datasets pattern="__name_and_ext__" directory="edge"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	219 <filter>plot_graph</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	220 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	221 <filter>merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single"))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	222 </collection>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	223 <collection name="flat_plot_collection" format="png" type="list" label="Flattened plots ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	224 <discover_datasets pattern="__name_and_ext__" directory="flat"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	225 <filter>plot_graph</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	226 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	227 <filter>merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single"))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	228 </collection>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	229 <collection name="derivative_plot_collection" format="png" type="list" label="Derivative plots ${annotation} ${on_string}">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	230 <discover_datasets pattern="__name_and_ext__" directory="derivative"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	231 <filter>plot_graph</filter>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	232 <filter>not zip_outputs</filter>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	233 <filter>merge_inputs["merge_inputs"] == "" and ((merge_inputs["format"]["format"] == "plaintext" and merge_inputs["format"]["is_zipped"]["is_zipped"]) or (merge_inputs["format"]["format"] == "athena" and merge_inputs["format"]["extract_group"]["extract_group"] != "single"))</filter>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	234 </collection>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	235 </outputs>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	236 <tests>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	237 <!-- 1 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	238 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	239 <param name="dat_file" value="test.xmu"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	240 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	241 <assert_contents>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	242 <has_size value="5400" delta="100"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	243 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	244 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	245 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	246 <!-- 2 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	247 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	248 <param name="dat_file" value="ffi0.tabular"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	249 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	250 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	251 <has_size value="34400" delta="100"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	252 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	253 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	254 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	255 <!-- 3 -->
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	256 <test expect_num_outputs="1">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	257 <param name="dat_file" value="ffi1.tabular"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	258 <output name="athena_project_file">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	259 <assert_contents>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	260 <has_size value="4400" delta="100"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	261 </assert_contents>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	262 </output>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	263 </test>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	264 <!-- 4 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	265 <test expect_num_outputs="4">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	266 <param name="dat_file" value="test.xmu"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	267 <param name="plot_graph" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	268 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	269 <assert_contents>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	270 <has_size value="5400" delta="100"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	271 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	272 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	273 <output name="edge_plot">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	274 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	275 <has_size value="54036" delta="20"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	276 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	277 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	278 <output name="flat_plot">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	279 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	280 <has_size value="39266" delta="20"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	281 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	282 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	283 <output name="derivative_plot">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	284 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	285 <has_size value="42435" delta="20"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	286 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	287 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	288 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	289 <!-- 5 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	290 <test expect_num_outputs="4">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	291 <param name="is_zipped" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	292 <param name="dat_file" value="test.zip"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	293 <param name="plot_graph" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	294 <output_collection name="athena_project_file_collection" type="list" count="2"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	295 <output_collection name="edge_plot_collection" type="list" count="2"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	296 <output_collection name="flat_plot_collection" type="list" count="2"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	297 <output_collection name="derivative_plot_collection" type="list" count="2"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	298 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	299 <!-- 6 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	300 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	301 <param name="is_zipped" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	302 <param name="dat_file" value="h5.zip"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	303 <param name="plot_graph" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	304 <param name="zip_outputs" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	305 <output name="out_zip">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	306 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	307 <has_size value="312000" delta="500"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	308 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	309 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	310 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	311 <!-- 7 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	312 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	313 <param name="dat_file" value="test.xmu"/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	314 <param name="calibrate" value="true"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	315 <param name="energy_min" value="7000"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	316 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	317 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	318 <has_size value="5300" delta="100"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	319 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	320 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	321 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	322 <!-- 8 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	323 <test expect_num_outputs="4">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	324 <param name="dat_file" value="test.xmu"/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	325 <param name="calibrate" value="true"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	326 <param name="energy_min" value="7000"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	327 <param name="energy_max" value="7200"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	328 <param name="plot_graph" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	329 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	330 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	331 <has_size value="3300" delta="50"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	332 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	333 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	334 <output name="edge_plot">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	335 <assert_contents>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	336 <has_size value="44900" delta="100"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	337 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	338 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	339 <output name="flat_plot">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	340 <assert_contents>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	341 <has_size value="39400" delta="100"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	342 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	343 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	344 <output name="derivative_plot">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	345 <assert_contents>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	346 <has_size value="45900" delta="100"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	347 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	348 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	349 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	350 <!-- 9 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	351 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	352 <param name="dat_file" value="test.xmu"/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	353 <param name="calibrate" value="true"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	354 <param name="calibration_e0" value="7050"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	355 <param name="energy_min" value="7000"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	356 <param name="energy_max" value="7200"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	357 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	358 <assert_contents>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	359 <has_size value="3600" delta="100"/>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	360 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	361 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	362 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	363 <!-- 10 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	364 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	365 <param name="dat_file" value="test.xmu"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	366 <param name="rebin" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	367 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	368 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	369 <has_size value="8413" delta="10"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	370 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	371 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	372 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	373 <!-- 11 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	374 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	375 <param name="merge_inputs" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	376 <param name="dat_file" value="262875_PtSn_OCO_Abu_1.nxs,262876_PtSn_OCO_Abu_2.nxs"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	377 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	378 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	379 <has_size value="37550" delta="50"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	380 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	381 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	382 </test>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	383 <!-- 12 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	384 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	385 <param name="merge_inputs" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	386 <param name="is_zipped" value="true"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	387 <param name="dat_file" value="test.zip"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	388 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	389 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	390 <has_size value="18000" delta="50"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	391 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	392 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	393 </test>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	394 <!-- 13: Test merging and plotting multiple prj inputs -->
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	395 <test expect_num_outputs="4">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	396 <param name="merge_inputs" value="true"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	397 <param name="format" value="athena"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	398 <param name="dat_file" value="test.prj,test.prj"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	399 <param name="plot_graph" value="true"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	400 <output name="athena_project_file">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	401 <assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	402 <has_size value="4500" delta="100"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	403 </assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	404 </output>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	405 <output name="edge_plot">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	406 <assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	407 <has_size value="54200" delta="100"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	408 </assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	409 </output>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	410 <output name="flat_plot">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	411 <assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	412 <has_size value="39400" delta="100"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	413 </assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	414 </output>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	415 <output name="derivative_plot">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	416 <assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	417 <has_size value="41800" delta="100"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	418 </assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	419 </output>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	420 </test>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	421 <!-- 14 -->
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	422 <test expect_num_outputs="1">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	423 <param name="format" value="athena"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	424 <param name="dat_file" value="test.prj"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	425 <output name="athena_project_file">
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	426 <assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	427 <has_size value="5400" delta="200"/>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	428 </assert_contents>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	429 </output>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	430 </test>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	431 <!-- 15: Extract multiple groups from Athena .prj -->
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	432 <test expect_num_outputs="1">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	433 <param name="format" value="athena"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	434 <param name="extract_group" value="multiple"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	435 <param name="group_name" value="merge"/>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	436 <param name="group_name" value="d_Ref_PtSn_OC_MERGE_CALIBRATE"/>
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	437 <param name="dat_file" value="multiple.prj"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	438 <output_collection name="athena_project_file_collection" type="list" count="2"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	439 </test>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	440 <!-- 16: Extract all groups from Athena .prj -->
1 2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	441 <test expect_num_outputs="1">
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	442 <param name="format" value="athena"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	443 <param name="extract_group" value="all"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	444 <param name="dat_file" value="multiple.prj"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	445 <output_collection name="athena_project_file_collection" type="list" count="9"/>
2b3115342fef planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 1cf6d7160497ba58fe16a51f00d088a20934eba6 muon-spectroscopy-computational-project parents: 0 diff changeset	446 </test>
2 a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	447 <!-- 17: Extract and merge all groups from Athena .prj -->
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	448 <test expect_num_outputs="1">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	449 <param name="merge_inputs" value="true"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	450 <param name="format" value="athena"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	451 <param name="extract_group" value="all"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	452 <param name="dat_file" value="multiple.prj"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	453 <output name="athena_project_file">
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	454 <assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	455 <has_size value="26000" delta="100"/>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	456 </assert_contents>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	457 </output>
a1e26990131c planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 0f66842e802430e887d1c6cb7be1cc5436408fd2 muon-spectroscopy-computational-project parents: 1 diff changeset	458 </test>
0 ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	459 </tests>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	460 <help><![CDATA[
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	461 Using Larch, create an Athena project file from the input X-ray Absorption Fine Structure (XAFS) data file.
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	462
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	463 Accepts both plaintext and HDF5 formatted data or a zip file containing these formats.
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	464 If column names are not present in plaintext data, then the first column is treated as `energy` and the second as `mu`.
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	465 Note that in order to ensure a consistent output, once unzipped all files will sorted first by their parent directories (alphabetically).
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	466 Within a given directory, if all filenames contain digits then the last block of digits will be used to sort the files numerically.
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	467 In the output, all files (regardless of initial filepath) are output in a flat hierarchy, with the number in which it was processed as the file name (zero-padded).
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	468 Care should therefore be taken to ensure input data is consistent with this treatment.
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	469
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	470 Optionally, plot the xμ data along with pre and post edge fitting lines for visual inspection.
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	471 ]]></help>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	472 <citations>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	473 <citation type="doi">@TOOL_CITATION@</citation>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	474 <citation type="doi">10.1107/S0909049505012719</citation>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	475 </citations>
ae2f265ecf8e planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 5be486890442dedfb327289d597e1c8110240735 muon-spectroscopy-computational-project parents: diff changeset	476 </tool>

Mercurial > repos > muon-spectroscopy-computational-project > larch_athena

annotate larch_athena.xml @ 2:a1e26990131c draft