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comparison larch_athena.xml @ 6:30cdfd70f28d draft

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planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 71cee2ed96b69a2e78a1eb3dadbd2e81bf332798
author muon-spectroscopy-computational-project
date Mon, 17 Jun 2024 13:54:39 +0000
parents 27015eaf9a78
children 351f2cce19d1
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5:27015eaf9a78 6:30cdfd70f28d
2 <description>generate Athena projects from XAFS data</description> 2 <description>generate Athena projects from XAFS data</description>
3 <macros> 3 <macros>
4 <!-- version of underlying tool (PEP 440) --> 4 <!-- version of underlying tool (PEP 440) -->
5 <token name="@TOOL_VERSION@">0.9.75</token> 5 <token name="@TOOL_VERSION@">0.9.75</token>
6 <!-- version of this tool wrapper (integer) --> 6 <!-- version of this tool wrapper (integer) -->
7 <token name="@WRAPPER_VERSION@">1</token> 7 <token name="@WRAPPER_VERSION@">2</token>
8 <!-- citation should be updated with every underlying tool version --> 8 <!-- citation should be updated with every underlying tool version -->
9 <!-- typical fields to update are version, month, year, and doi --> 9 <!-- typical fields to update are version, month, year, and doi -->
10 <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token> 10 <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token>
11 <xml name="format"> 11 <xml name="format">
12 <param name="format" type="select" display="radio" label="Input format" help="Whether data is in tabular or NeXus (h5) format, or has already saved as an Athena project"> 12 <param name="format" type="select" display="radio" label="Input format" help="Whether data is in tabular or NeXus (h5) format, or has already saved as an Athena project">
455 <param name="dat_file" value="nested.zip"/> 455 <param name="dat_file" value="nested.zip"/>
456 <param name="plot_graph" value="edge,flat,dmude"/> 456 <param name="plot_graph" value="edge,flat,dmude"/>
457 <output_collection name="athena_project_file_collection" type="list" count="2"/> 457 <output_collection name="athena_project_file_collection" type="list" count="2"/>
458 <output_collection name="plot_collection" type="list" count="2"/> 458 <output_collection name="plot_collection" type="list" count="2"/>
459 </test> 459 </test>
460 <!-- 19: MACOSX zip -->
461 <test expect_num_outputs="2">
462 <param name="is_zipped" value="true"/>
463 <param name="dat_file" value="macosx.zip"/>
464 <param name="plot_graph" value="edge,flat,dmude"/>
465 <output_collection name="athena_project_file_collection" type="list" count="10"/>
466 <output_collection name="plot_collection" type="list" count="10"/>
467 </test>
460 </tests> 468 </tests>
461 <help><![CDATA[ 469 <help><![CDATA[
462 Using Larch, create an Athena project file from the input X-ray Absorption Fine Structure (XAFS) data file. 470 Using Larch, create an Athena project file from the input X-ray Absorption Fine Structure (XAFS) data file.
463 471
464 Accepts both tabular and NeXus/HDF5 formatted data or a zip file containing these formats. 472 Accepts both tabular and NeXus/HDF5 formatted data or a zip file containing these formats.