Mercurial > repos > muon-spectroscopy-computational-project > larch_athena
diff larch_athena.py @ 6:30cdfd70f28d draft
planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_athena commit 71cee2ed96b69a2e78a1eb3dadbd2e81bf332798
author | muon-spectroscopy-computational-project |
---|---|
date | Mon, 17 Jun 2024 13:54:39 +0000 |
parents | 27015eaf9a78 |
children |
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--- a/larch_athena.py Mon May 20 15:34:58 2024 +0000 +++ b/larch_athena.py Mon Jun 17 13:54:39 2024 +0000 @@ -1,13 +1,13 @@ import gc import json import os -import re import sys from common import ( pre_edge_with_defaults, read_all_groups, read_group, + sorting_key, xftf_with_defaults, ) @@ -142,15 +142,16 @@ return xafs_group def load_zipped_files(self) -> "dict[str, Group]": - def sorting_key(filename: str) -> str: - return re.findall(r"\d+", filename)[-1] - all_paths = list(os.walk("dat_files")) all_paths.sort(key=lambda x: x[0]) file_total = sum([len(f) for _, _, f in all_paths]) print(f"{file_total} files found") keyed_data = {} for dirpath, _, filenames in all_paths: + if dirpath.endswith("__MACOSX"): + print(f"Skipping {dirpath}") + continue + try: filenames.sort(key=sorting_key) except IndexError as e: