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comparison larch_plot.xml @ 1:002c18a3e642 draft

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planemo upload for repository https://github.com/MaterialsGalaxy/larch-tools/tree/main/larch_plot commit 1cf6d7160497ba58fe16a51f00d088a20934eba6
author muon-spectroscopy-computational-project
date Wed, 06 Dec 2023 13:04:06 +0000
parents 886949a03377
children 59d0d15a40ef
comparison
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0:886949a03377 1:002c18a3e642
2 <description>plot Athena projects</description> 2 <description>plot Athena projects</description>
3 <macros> 3 <macros>
4 <!-- version of underlying tool (PEP 440) --> 4 <!-- version of underlying tool (PEP 440) -->
5 <token name="@TOOL_VERSION@">0.9.71</token> 5 <token name="@TOOL_VERSION@">0.9.71</token>
6 <!-- version of this tool wrapper (integer) --> 6 <!-- version of this tool wrapper (integer) -->
7 <token name="@WRAPPER_VERSION@">0</token> 7 <token name="@WRAPPER_VERSION@">1</token>
8 <!-- citation should be updated with every underlying tool version --> 8 <!-- citation should be updated with every underlying tool version -->
9 <!-- typical fields to update are version, month, year, and doi --> 9 <!-- typical fields to update are version, month, year, and doi -->
10 <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token> 10 <token name="@TOOL_CITATION@">10.1088/1742-6596/430/1/012007</token>
11 <import>macros.xml</import> 11 <import>macros.xml</import>
12 </macros> 12 </macros>
36 <option value="norm" selected="true">Normalised xμ</option> 36 <option value="norm" selected="true">Normalised xμ</option>
37 <option value="dmude">Derivative of xμ</option> 37 <option value="dmude">Derivative of xμ</option>
38 <option value="chir_mag">Magnitude of χ(r)</option> 38 <option value="chir_mag">Magnitude of χ(r)</option>
39 </param> 39 </param>
40 <when value="norm"> 40 <when value="norm">
41 <expand macro="energy_limits"/> 41 <expand macro="plot_limits_energy"/>
42 <param name="y_limit_min" type="float" label="Minimum xμ(E)" optional="true" help="If set, plot will be limited to this value on the y axis."/>
43 <param name="y_limit_max" type="float" label="Maximum xμ(E)" optional="true" help="If set, plot will be limited to this value on the y axis."/>
42 </when> 44 </when>
43 <when value="dmude"> 45 <when value="dmude">
44 <expand macro="energy_limits"/> 46 <expand macro="plot_limits_energy"/>
47 <param name="y_limit_min" type="float" label="Minimum d(xμ(E))/dE" optional="true" help="If set, plot will be limited to this value on the y axis."/>
48 <param name="y_limit_max" type="float" label="Maximum d(xμ(E))/dE" optional="true" help="If set, plot will be limited to this value on the y axis."/>
45 </when> 49 </when>
46 <when value="chir_mag"> 50 <when value="chir_mag">
47 <param name="energy_min" type="float" label="Minimum r (ang)" optional="true" help="If set, data will be cropped below this value in angstroms."/> 51 <param name="x_limit_min" type="float" label="Minimum r (ang)" optional="true" help="If set, plot will be limited to this value on the x axis."/>
48 <param name="energy_max" type="float" label="Maximum r (ang)" optional="true" help="If set, data will be cropped above this value in angstroms."/> 52 <param name="x_limit_max" type="float" label="Maximum r (ang)" optional="true" help="If set, plot will be limited to this value on the x axis."/>
53 <param name="y_limit_min" type="float" label="Minimum |χ(r)|" optional="true" help="If set, plot will be limited to this value on the y axis."/>
54 <param name="y_limit_max" type="float" label="Maximum |χ(r)|" optional="true" help="If set, plot will be limited to this value on the y axis."/>
49 </when> 55 </when>
50 </conditional> 56 </conditional>
51 </repeat> 57 </repeat>
52 </inputs> 58 </inputs>
53 <outputs> 59 <outputs>
54 <collection name="plot_collection" format="png" type="list"> 60 <collection name="plot_collection" format="png" type="list">
55 <discover_datasets pattern="__name_and_ext__" directory="plots"/> 61 <discover_datasets pattern="__name_and_ext__" directory="plots"/>
56 </collection> 62 </collection>
57 </outputs> 63 </outputs>
58 <tests> 64 <tests>
65 <!-- 1: plot types -->
59 <test expect_num_outputs="1"> 66 <test expect_num_outputs="1">
60 <param name="dat_files" value="test.prj"/> 67 <param name="dat_files" value="test.prj"/>
61 <param name="variable" value="norm"/> 68 <param name="variable" value="norm"/>
62 <param name="energy_format" value="absolute"/>
63 <param name="energy_min" value="7000"/>
64 <param name="variable" value="dmude"/> 69 <param name="variable" value="dmude"/>
65 <param name="energy_format" value="relative"/> 70 <param name="variable" value="chir_mag"/>
66 <param name="energy_max" value="10"/> 71 <output_collection name="plot_collection" type="list" count="3"/>
67 <output_collection name="plot_collection" type="list" count="2"/> 72 </test>
73 <!-- 2: plot limits -->
74 <test expect_num_outputs="1">
75 <param name="dat_files" value="test.prj"/>
76 <param name="variable" value="norm"/>
77 <param name="x_limit_min" value="7000"/>
78 <param name="x_limit_max" value="7200"/>
79 <param name="y_limit_min" value="0"/>
80 <param name="y_limit_max" value="1"/>
81 <output_collection name="plot_collection" type="list" count="1"/>
68 </test> 82 </test>
69 </tests> 83 </tests>
70 <help><![CDATA[ 84 <help><![CDATA[
71 Using Larch, read Athena project files and plot data from them. 85 Using Larch, read Athena project files and plot data from them.
72 86