mudirac: mudirac.xml annotate

annotate mudirac.xml @ 0:eaf0f01cc0f6 draft default tip

planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65

author	muon-spectroscopy-computational-project
date	Thu, 18 Jul 2024 09:07:00 +0000
parents
children

rev	line source
0 eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	1 <tool id="mudirac" name="MuDirac" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@" profile="23.0" license="MIT">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	2 <description>Muonic atom Dirac equation solver</description>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	3 <macros>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	4 <token name="@TOOL_VERSION@">1.0.1</token>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	5 <token name="@WRAPPER_VERSION@">0</token>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	6 </macros>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	7 <creator>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	8 <person givenName="Subindev" familyName="Devadasan" url="https://github.com/subindev-d" identifier="https://orcid.org/0009-0001-1723-4394"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	9 <organization url="https://muon-spectroscopy-computational-project.github.io/index.html" name="The Muon Spectroscopy Computational Project"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	10 </creator>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	11 <requirements>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	12 <requirement type="package" version="@TOOL_VERSION@">mudirac</requirement>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	13 <requirement type="package" version="3.5.1">matplotlib</requirement>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	14 </requirements>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	15 <required_files>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	16 <include type="literal" path="spectrum_plot.py"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	17 </required_files>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	18 <command detect_errors="exit_code"><![CDATA[
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	19 cat '$input_yaml' > input.in &&
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	20 mudirac input.in
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	21 #if $generate_spectrum.generate_spectrum_selector=='true':
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	22 && mkdir plots && python '${__tool_directory__}/spectrum_plot.py' 'input.spec.dat'
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	23
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	24 #if $generate_spectrum.spectrum_raw_data=='true':
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	25 '-f'
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	26 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	27
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	28 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	29 ]]></command>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	30 <configfiles>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	31 <configfile name="input_yaml">element: $element
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	32 isotope: $isotope
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	33 xr_lines: $xr_lines
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	34 uehling_correction: $uehling_correction.uehling_correction
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	35 #if $uehling_correction.uehling_correction=='true':
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	36 #if $uehling_correction.uehling_steps:
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	37 uehling_steps: $uehling_correction.uehling_steps
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	38 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	39 #if $uehling_correction.uehling_lowcut
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	40 uehling_lowcut: $uehling_correction.uehling_lowcut
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	41 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	42 #if $uehling_correction.uehling_highcut:
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	43 uehling_highcut: $uehling_correction.uehling_highcut
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	44 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	45 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	46 nuclear_model: $nuclear_model
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	47 output: $output_level
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	48 write_spec: $generate_spectrum.generate_spectrum_selector
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	49 #if $electronic_config:
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	50 electronic_config: $electronic_config
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	51 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	52 #if $max_E_iter:
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	53 max_E_iter: $max_E_iter
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	54 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	55 #if $max_nodes_iter:
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	56 max_nodes_iter: $max_nodes_iter
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	57 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	58 #if $max_state_iter:
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	59 max_state_iter: $max_state_iter
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	60 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	61 #if $generate_spectrum.generate_spectrum_selector=='true':
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	62 #if $spec_step
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	63 spec_step: $spec_step
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	64 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	65 #if $spec_linewidth
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	66 spec_linewidth: $spec_linewidth
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	67 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	68 #if $spec_expdec
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	69 spec_expdec: $spec_expdec
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	70 #end if
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	71 #end if</configfile>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	72 </configfiles>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	73 <inputs>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	74 <param name="element" type="select" value="H" label="Element" help="Determines the nuclear charge. Can be any symbol in the periodic table up to Z=111, Roentgenium (Rg)" optional="false">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	75 <!-- Period 1 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	76 <option value="H">H</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	77 <option value="He">He</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	78 <!-- Period 2 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	79 <option value="Li">Li</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	80 <option value="Be">Be</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	81 <option value="B">B</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	82 <option value="C">C</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	83 <option value="N">N</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	84 <option value="O">O</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	85 <option value="F">F</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	86 <option value="Ne">Ne</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	87 <!-- Period 3 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	88 <option value="Na">Na</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	89 <option value="Mg">Mg</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	90 <option value="Al">Al</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	91 <option value="Si">Si</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	92 <option value="P">P</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	93 <option value="S">S</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	94 <option value="Cl">Cl</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	95 <option value="Ar">Ar</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	96 <!-- Period 4 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	97 <option value="K">K</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	98 <option value="Ca">Ca</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	99 <option value="Sc">Sc</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	100 <option value="Ti">Ti</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	101 <option value="V">V</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	102 <option value="Cr">Cr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	103 <option value="Mn">Mn</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	104 <option value="Fe">Fe</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	105 <option value="Co">Co</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	106 <option value="Ni">Ni</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	107 <option value="Cu">Cu</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	108 <option value="Zn">Zn</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	109 <option value="Ga">Ga</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	110 <option value="Ge">Ge</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	111 <option value="As">As</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	112 <option value="Se">Se</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	113 <option value="Br">Br</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	114 <option value="Kr">Kr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	115 <!-- Period 5 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	116 <option value="Rb">Rb</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	117 <option value="Sr">Sr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	118 <option value="Y">Y</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	119 <option value="Zr">Zr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	120 <option value="Nb">Nb</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	121 <option value="Mo">Mo</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	122 <option value="Tc">Tc</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	123 <option value="Ru">Ru</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	124 <option value="Rh">Rh</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	125 <option value="Pd">Pd</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	126 <option value="Ag">Ag</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	127 <option value="Cd">Cd</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	128 <option value="In">In</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	129 <option value="Sn">Sn</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	130 <option value="Sb">Sb</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	131 <option value="Te">Te</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	132 <option value="I">I</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	133 <option value="Xe">Xe</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	134 <!-- Period 6 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	135 <option value="Cs">Cs</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	136 <option value="Ba">Ba</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	137 <option value="La">La</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	138 <option value="Ce">Ce</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	139 <option value="Pr">Pr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	140 <option value="Nd">Nd</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	141 <option value="Pm">Pm</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	142 <option value="Sm">Sm</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	143 <option value="Eu">Eu</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	144 <option value="Gd">Gd</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	145 <option value="Tb">Tb</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	146 <option value="Dy">Dy</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	147 <option value="Ho">Ho</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	148 <option value="Er">Er</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	149 <option value="Tm">Tm</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	150 <option value="Yb">Yb</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	151 <option value="Lu">Lu</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	152 <option value="Hf">Hf</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	153 <option value="Ta">Ta</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	154 <option value="W">W</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	155 <option value="Re">Re</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	156 <option value="Os">Os</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	157 <option value="Ir">Ir</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	158 <option value="Pt">Pt</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	159 <option value="Au">Au</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	160 <option value="Hg">Hg</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	161 <option value="Tl">Tl</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	162 <option value="Pb">Pb</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	163 <option value="Bi">Bi</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	164 <option value="Po">Po</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	165 <option value="At">At</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	166 <option value="Rn">Rn</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	167 <!-- Period 7 -->
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	168 <option value="Fr">Fr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	169 <option value="Ra">Ra</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	170 <option value="Ac">Ac</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	171 <option value="Th">Th</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	172 <option value="Pa">Pa</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	173 <option value="U">U</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	174 <option value="Np">Np</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	175 <option value="Pu">Pu</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	176 <option value="Am">Am</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	177 <option value="Cm">Cm</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	178 <option value="Bk">Bk</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	179 <option value="Cf">Cf</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	180 <option value="Es">Es</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	181 <option value="Fm">Fm</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	182 <option value="Md">Md</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	183 <option value="No">No</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	184 <option value="Lr">Lr</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	185 <option value="Rf">Rf</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	186 <option value="Db">Db</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	187 <option value="Sg">Sg</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	188 <option value="Bh">Bh</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	189 <option value="Hs">Hs</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	190 <option value="Mt">Mt</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	191 <option value="Ds">Ds</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	192 <option value="Rg">Rg</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	193 </param>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	194 <param name="isotope" type="integer" value="-1" label="which isotope of the element to consider" help=" Important to determine the mass of the nucleus and its size. Default is -1,
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	195 which means the most common isotope for the element will be used." optional="false">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	196 <validator type="in_range" min="-1" max="283"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	197 </param>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	198 <param name="xr_lines" type="text" label="the transition or transitions for which energy and rates are desired" help=" Each line must be expressed using the conventional IUPAC notation [Jenkins et al., 1991].
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	199 Multiple lines can be separated by commas. For example: K1-L2,K1-L3 . In addition, colons can be used to indicate ranges of lines. The notation K1:L3-M1 would compute the lines K1-M1, L1-M1, L2-M1 and L3-M1.
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	200 Note that if some of these lines are forbidden by selection rules, they will simply be skipped. A double colon, like K1:L3-K1:L3 would loop on both sides, and not count all repeated lines." optional="false">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	201 <validator type="empty_field" message="This input shoule not be empty"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	202 </param>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	203 <param name="nuclear_model" type="select" label="Model used to describe the nucleus">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	204 <option value="POINT" selected="true"> point charge </option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	205 <option value="SPHERE"> finite size, uniformly charged spherical nucleus </option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	206 <option value="FERMI2"> Fermi 2-term charge distribution </option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	207 </param>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	208 <conditional name="uehling_correction">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	209 <param name="uehling_correction" type="select" display="radio" label="Uehling correction" help="whether to turn on the Uehling correction or not">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	210 <option value="false" selected="true">False</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	211 <option value="true">True</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	212 </param>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	213 <when value="false"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	214 <when value="true">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	215 <param name="uehling_steps" type="integer" value="100" min="0" label="integration steps for the Uehling potential." help=" Higher numbers will make the Uehling energy more precise but increase computation times. Default is 100."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	216 <param name="uehling_lowcut" type="float" value="0" min="0" label="low cutoff for Uehling potential" help="under low cutoff, the radius will be considered 0. Default is 0."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	217 <param name="uehling_highcut" type="float" value="" min="0" label="high cutoff for Uehling potential" help="over high cutoff, the radius will be considered r > > c . Default is INFINITY." optional="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	218 </when>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	219 </conditional>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	220 <param name="electronic_config" type="text" value="" label="electronic configuration to use in order to describe the negative charge background" help="Can be a full string describing the configuration (e.g. 1s2 2s2 2p2),
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	221 an element symbol to represent the default configuration of that atom when neutral (e.g. C) or a mix of the two (e.g. [He] 2s2 2p2)" optional="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	222 <param name="max_E_iter" type="integer" value="100" min="0" label="maximum number of iterations to perform when searching for the energy of a state." help="If exceeded, convergence will fail. Increase this value for slow convergences that are however progressing. Default is 100."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	223 <param name="max_nodes_iter" type="integer" value="100" min="0" label="maximum number of iterations to perform when searching for a starting energy value that gives a state the expected number of nodes." help="If exceeded, convergence will fail. Should generally not need to be adjusted. Default is 100."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	224 <param name="max_state_iter" type="integer" value="100" min="0" label=" maximum number of iterations to perform when searching for a state." help=" This loop encloses both node-based and energy-based search. Once a state is converged, the program checks again that it has the correct number of nodes.
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	225 If it does not, the state is stored for future use and to provide an upper or lower limit to the energy of the searches and then the process is repeated. This number represents how much can the process be repeated before failing. Should not generally need to be adjusted. Default is 100."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	226 <param name='output_level' type="boolean" value="false" falsevalue="1" truevalue="2" label="Produce states and transition matrices" help="Also produce each of the states in a separate file as well as the transition matrices for each line"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	227 <conditional name="generate_spectrum">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	228 <param name="generate_spectrum_selector" type="select" display="radio" value="false" label="Generate spectrum" help="Generate spectrum using the transition lines found broadened with Gaussian functions">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	229 <option value="false" selected="true">False</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	230 <option value="true">True</option>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	231 </param>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	232 <when value="false"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	233 <when value="true">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	234 <param name="spectrum_raw_data" type="boolean" checked="false" label="Generate raw spectrum file" help="Enabling this will produce raw data of the spectrum in csv format."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	235 <param name="spec_step" type="float" value="100" min="0" label="Spectrum step" help="energy step for the simulated spectrum, in eV. Default is 1E2 eV."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	236 <param name="spec_linewidth" type="float" value="1000" min="0" label="Spectrum line width" help="Gaussian broadening width for the simulated spectrum, in eV. Default is 1E3."/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	237 <param name="spec_expdec" type="float" min="0" label="Exponential decay parameter" help="Defines the sensitivity factor E_dec, in eV. If set, multiplies the entire spectrum by exp(-E/E_dec) . If unset, no decay applied." optional="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	238 </when>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	239 </conditional>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	240 </inputs>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	241 <outputs>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	242 <data name="output" format="tabular" label="Output of ${tool.name} (${element})" from_work_dir="input.xr.out"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	243 <collection name="states" format="tabular" label="States (${element})" type="list">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	244 <filter>output_level==True</filter>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	245 <discover_datasets pattern="(input)\.(?P<designation>[KLMNOPQ]\d).out" format="tabular" visible="true" />
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	246 </collection>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	247 <collection name="transition_matrices" format="tabular" label="Transition matrices (${element})" type="list">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	248 <filter>output_level==True</filter>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	249 <discover_datasets pattern="(input)\.(?P<designation>[KLM]\d-[KLM]\d).tmat.out" format="tabular" visible="true" />
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	250 </collection>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	251 <data name="log_out" label="log file of ${tool.name} (${element})" format="txt" from_work_dir="input.log"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	252 <data name="error_log" label="Error log file of ${tool.name} (${element})" format="txt" from_work_dir="input.err"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	253 <data name="spectrum" label="Spectrum (${element})" format="png" from_work_dir="plots/input.spec.dat.png">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	254 <filter>generate_spectrum['generate_spectrum_selector']=='true'</filter>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	255 </data>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	256 <data name="spectrum_raw_data" label="Raw data file of ${tool.name} (${element}) spectrum" format="tabular" from_work_dir="plots/spectrum.csv">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	257 <filter>generate_spectrum['generate_spectrum_selector']=='true' and generate_spectrum['spectrum_raw_data']==True</filter>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	258 </data>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	259 </outputs>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	260 <tests>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	261 <test expect_num_outputs="3">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	262 <param name="element" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	263 <param name="isotope" value="197"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	264 <param name="xr_lines" value="K1-L2,K1-L3"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	265 <output name="output" file="Au_basic.xr.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	266 <output name="error_log">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	267 <assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	268 <has_size max="0"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	269 </assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	270 </output>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	271 </test>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	272 <test expect_num_outputs="3">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	273 <param name="element" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	274 <param name="isotope" value="197"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	275 <param name="xr_lines" value="K1-L2,K1-L3"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	276 <param name="max_E_iter" value="100"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	277 <param name="max_nodes_iter" value="100"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	278 <param name="max_state_iter" value="100"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	279 <output name="output" file="Au_basic.xr.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	280 <output name="error_log">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	281 <assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	282 <has_size max="0"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	283 </assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	284 </output>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	285 </test>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	286 <test expect_num_outputs="3">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	287 <param name="element" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	288 <param name="isotope" value="197"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	289 <param name="xr_lines" value="K1-L2,K1-L3"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	290 <param name="nuclear_model" value="FERMI2"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	291 <conditional name="uehling_correction">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	292 <param name="uehling_correction" value="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	293 </conditional>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	294 <param name="electronic_config" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	295 <output name="output" file="Au.xr.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	296 <output name="error_log">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	297 <assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	298 <has_size max="0"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	299 </assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	300 </output>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	301 </test>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	302 <test expect_num_outputs="5">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	303 <param name="element" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	304 <param name="isotope" value="197"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	305 <param name="xr_lines" value="K1-L2,K1-L3"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	306 <param name="output_level" value="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	307 <output name="output" file="Au_basic.xr.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	308 <output_collection name="states" count="3" type="list">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	309 <element name="K1" file="Au.K1.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	310 <element name="L2" file="Au.L2.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	311 <element name="L3" file="Au.L3.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	312 </output_collection>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	313 <output_collection name="transition_matrices" count="2" type="list">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	314 <element name="K1-L2" file="Au.K1-L2.tmat.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	315 <element name="K1-L3" file="Au.K1-L3.tmat.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	316 </output_collection>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	317 <output name="error_log">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	318 <assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	319 <has_size max="0"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	320 </assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	321 </output>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	322 </test>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	323 <test expect_num_outputs="4">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	324 <param name="element" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	325 <param name="isotope" value="197"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	326 <param name="xr_lines" value="K1-L2,K1-L3"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	327 <conditional name='generate_spectrum'>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	328 <param name="generate_spectrum_selector" value="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	329 </conditional>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	330 <output name="output" file="Au_basic.xr.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	331 <output name="error_log">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	332 <assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	333 <has_size max="0"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	334 </assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	335 </output>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	336 </test>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	337 <test expect_num_outputs="5">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	338 <param name="element" value="Au"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	339 <param name="isotope" value="197"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	340 <param name="xr_lines" value="K1-L2,K1-L3"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	341 <conditional name='generate_spectrum'>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	342 <param name="generate_spectrum_selector" value="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	343 <param name="spectrum_raw_data" value="true"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	344 </conditional>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	345 <output name="output" file="Au_basic.xr.out" ftype="tabular" compare="diff"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	346 <output name="error_log">
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	347 <assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	348 <has_size max="0"/>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	349 </assert_contents>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	350 </output>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	351 </test>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	352 </tests>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	353 <help><![CDATA[
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	354 MuDirac is a simulation software that integrates the Dirac equation for muonic atoms to compute their X-Ray transition energies;
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	355 Full documentation: https://muon-spectroscopy-computational-project.github.io/mudirac/
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	356 ]]></help>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	357 <citations>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	358 <citation type="doi">10.1002/xrs.3212</citation>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	359 <citation type="doi">10.1002/xrs.1300200308</citation>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	360 </citations>
eaf0f01cc0f6 planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/tree/main/mudirac commit 389608650050596b28bc0c055de9f98c513a6f65 muon-spectroscopy-computational-project parents: diff changeset	361 </tool>

Mercurial > repos > muon-spectroscopy-computational-project > mudirac

annotate mudirac.xml @ 0:eaf0f01cc0f6 draft default tip