diff pm_asephonons.xml @ 3:fd28cbdb134e draft

planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/main/pm_asephonons commit 70a4d37ecdf5d586703cfc509922311e95d3205c
author muon-spectroscopy-computational-project
date Tue, 18 Jul 2023 13:26:32 +0000
parents dd3ca8457fcd
children b47a2fd2b10f
line wrap: on
line diff
--- a/pm_asephonons.xml	Fri Feb 03 15:39:17 2023 +0000
+++ b/pm_asephonons.xml	Tue Jul 18 13:26:32 2023 +0000
@@ -1,24 +1,8 @@
-<tool id="pm_asephonons" name="PyMuonSuite Phonons" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@" python_template_version="3.5" profile="22.05" license="MIT">
+<tool id="pm_asephonons" name="PyMuonSuite Phonons" version="@PYMUONSUITE_VERSION@+galaxy@WRAPPER_VERSION@" python_template_version="3.5" profile="22.05" license="MIT">
     <description>calculate phonons using ASE and DFTB+</description>
     <macros>
-        <!-- version of underlying tool (PEP 440) -->
-        <token name="@TOOL_VERSION@">0.2.3</token>
         <!-- version of this tool wrapper (integer) -->
         <token name="@WRAPPER_VERSION@">0</token>
-        <!-- citation should be updated with every underlying tool version -->
-        <!-- typical fields to update are version, month, year, and doi -->
-        <token name="@PYMUONSUITE_CITATION@">
-            @software{Sturniolo_pymuon-suite_2022,
-                author = {Sturniolo, Simone and Liborio, Leandro and Chadwick, Eli and Murgatroyd, Laura and Laverack, Adam and Mudaraddi, Anish and {Muon Spectroscopy Computational Project}},
-                license = {GPL-3.0},
-                month = {8},
-                title = {{pymuon-suite}},
-                url = {https://github.com/muon-spectroscopy-computational-project/pymuon-suite},
-                version = {v0.2.3},
-                doi = {10.5281/zenodo.7025644},
-                year = {2022}
-            }
-        </token>
         <import>muon_macros.xml</import>
     </macros>
     <creator>
@@ -28,7 +12,7 @@
     </creator>
     <requirements>
         <!-- note versioning is different due to multiple dependencies -->
-        <requirement type="package" version="@TOOL_VERSION@">pymuonsuite</requirement>
+        <requirement type="package" version="@PYMUONSUITE_VERSION@">pymuonsuite</requirement>
         <requirement type="package" version="21.2">dftbplus</requirement>
         <requirement type="package" version="1.22.4">numpy</requirement> <!-- pinned due to numpy/ASE/DFTB+ incompatibility https://github.com/dftbplus/dftbplus/issues/1064 -->
         <requirement type="package" version="3.0">zip</requirement>
@@ -188,9 +172,7 @@
         |
     ]]></help>
     <citations>
-        <citation type="bibtex">
-            @PYMUONSUITE_CITATION@
-        </citation>
+        <citation type="doi">@PYMUONSUITE_CITATION@</citation>
         <citation type="doi">10.1063/1.5085197</citation>
         <citation type="bibtex">
             @article{larsen2017atomic,