# HG changeset patch
# User muon-spectroscopy-computational-project
# Date 1689686817 0
# Node ID f08b8c705e746f5aa6f1f1e61eb4d1611d7e0e2d
# Parent  16ef6bc73b171e63f2840d547094a7649f444699
planemo upload for repository https://github.com/muon-spectroscopy-computational-project/muon-galaxy-tools/main/pm_nq commit 70a4d37ecdf5d586703cfc509922311e95d3205c

diff -r 16ef6bc73b17 -r f08b8c705e74 muon_macros.xml
--- a/muon_macros.xml	Fri Feb 03 15:39:49 2023 +0000
+++ b/muon_macros.xml	Tue Jul 18 13:26:57 2023 +0000
@@ -17,4 +17,13 @@
             <validator type="regex" message="Input should only contain whitespace, '[', ']', ',' and digits.">^[\s\d,\[\]]+$</validator>
         </param>
     </xml>
+    <!-- version of underlying tool (PEP 440) -->
+    <!-- citation should be updated with every underlying tool version -->
+    <!-- concept is not updated, and should only be used for referencing the idea of the software -->
+    <token name="@MUSPINSIM_VERSION@">2.2.1</token>
+    <token name="@MUSPINSIM_CITATION@">10.5281/zenodo.7733979</token>
+    <token name="@MUSPINSIM_CONCEPT@">10.5281/zenodo.6517626</token>
+    <token name="@PYMUONSUITE_VERSION@">0.3.0</token>
+    <token name="@PYMUONSUITE_CITATION@">10.5281/zenodo.8026711</token>
+    <token name="@PYMUONSUITE_CONCEPT@">10.5281/zenodo.7025643</token>
 </macros>
\ No newline at end of file
diff -r 16ef6bc73b17 -r f08b8c705e74 pm_nq.xml
--- a/pm_nq.xml	Fri Feb 03 15:39:49 2023 +0000
+++ b/pm_nq.xml	Tue Jul 18 13:26:57 2023 +0000
@@ -1,32 +1,16 @@
-<tool id="pm_nq" name="PyMuonSuite Quantum Averaging" version="@TOOL_VERSION@+galaxy@WRAPPER_VERSION@" python_template_version="3.5" profile="22.05">
+<tool id="pm_nq" name="PyMuonSuite Quantum Averaging" version="@PYMUONSUITE_VERSION@+galaxy@WRAPPER_VERSION@" python_template_version="3.5" profile="22.05">
     <description>generate and average displaced structures</description>
     <macros>
-        <!-- version of underlying tool (PEP 440) -->
-        <token name="@TOOL_VERSION@">0.2.3</token>
         <!-- version of this tool wrapper (integer) -->
         <token name="@WRAPPER_VERSION@">0</token>
-        <!-- citation should be updated with every underlying tool version -->
-        <!-- typical fields to update are version, month, year, and doi -->
-        <token name="@TOOL_CITATION@">
-            @software{Sturniolo_pymuon-suite_2022,
-                author = {Sturniolo, Simone and Liborio, Leandro and Chadwick, Eli and Murgatroyd, Laura and Laverack, Adam and Mudaraddi, Anish and {Muon Spectroscopy Computational Project}},
-                license = {GPL-3.0},
-                month = {8},
-                title = {{pymuon-suite}},
-                url = {https://github.com/muon-spectroscopy-computational-project/pymuon-suite},
-                version = {v0.2.3},
-                doi = {10.5281/zenodo.7025644},
-                year = {2022}
-            }
-        </token>
         <import>muon_macros.xml</import>
     </macros>
     <creator>
-        <person givenName="Patrick" familyName="Austin" url="https://github.com/patrick-austin"/>
+        <person givenName="Patrick" familyName="Austin" url="https://github.com/patrick-austin" identifier="https://orcid.org/0000-0002-6279-7823"/>
         <organization url="https://muon-spectroscopy-computational-project.github.io/index.html" name="The Muon Spectroscopy Computational Project"/>
     </creator>
     <requirements>
-        <requirement type="package" version="@TOOL_VERSION@">pymuonsuite</requirement>
+        <requirement type="package" version="@PYMUONSUITE_VERSION@">pymuonsuite</requirement>
         <requirement type="package" version="1.0.0">euphonic</requirement>
         <requirement type="package" version="3.0">zip</requirement>
     </requirements>
@@ -322,11 +306,10 @@
         +----------+------------------------------------------------------------+
 
         |
+
         .. _Generate muonated structures: /tool_runner?tool_id=pm_muairss_write
     ]]></help>
     <citations>
-        <citation type="bibtex">
-            @TOOL_CITATION@
-        </citation>
+        <citation type="doi">@PYMUONSUITE_CITATION@</citation>
     </citations>
 </tool>