Mercurial > repos > mvdbeek > bam_readtagger

annotate tool_data_table_conf.xml.sample @ 56:b50e114fece9 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit c3a7b2f6aa429ea2881ee8d111ace3cce95bb9e7
author mvdbeek
date Sun, 28 Jul 2019 15:59:14 -0400
parents 7191da0bc7be
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301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
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1 <!-- Use the file tool_data_table_conf.xml.oldlocstyle if you don't want to update your loc files as changed in revision 4550:535d276c92bc-->
301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
parents:
diff changeset
2 <tables>
301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
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3 <!-- Locations of indexes in the BWA mapper format for BWA versions 0.6 and higher including BWA MEM and ALN-->
301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
parents:
diff changeset
4 <table name="bwa_mem_indexes" comment_char="#">
301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
parents:
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5 <columns>value, dbkey, name, path</columns>
301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
parents:
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6 <file path="tool-data/bwa_mem_index.loc" />
301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
parents:
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7 </table>
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7191da0bc7be planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0c8bad7554890f0f0e2c53d11e64e41fc835d920
mvdbeek
parents: 31
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8 <!-- Locations of all fasta files under genome directory -->
7191da0bc7be planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0c8bad7554890f0f0e2c53d11e64e41fc835d920
mvdbeek
parents: 31
diff changeset
9 <table name="all_fasta" comment_char="#">
7191da0bc7be planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0c8bad7554890f0f0e2c53d11e64e41fc835d920
mvdbeek
parents: 31
diff changeset
10 <columns>value, dbkey, name, path</columns>
7191da0bc7be planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0c8bad7554890f0f0e2c53d11e64e41fc835d920
mvdbeek
parents: 31
diff changeset
11 <file path="tool-data/all_fasta.loc" />
7191da0bc7be planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0c8bad7554890f0f0e2c53d11e64e41fc835d920
mvdbeek
parents: 31
diff changeset
12 </table>
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301316cb596a planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
mvdbeek
parents:
diff changeset
13 </tables>