Mercurial > repos > mvdbeek > bam_readtagger

comparison macros.xml @ 31:301316cb596a draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 6e01a2e472ebbb07ce5181b836bae8bc5c7ecf36-dirty
author mvdbeek
date Wed, 21 Jun 2017 09:38:25 -0400
parents a38447a59412
children
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30:db5c766503dd 31:301316cb596a
24 <option value="V">V</option> 24 <option value="V">V</option>
25 <option value="W">W</option> 25 <option value="W">W</option>
26 <option value="X">X</option> 26 <option value="X">X</option>
27 <option value="Y">Y</option> 27 <option value="Y">Y</option>
28 </xml> 28 </xml>
29 <xml name="reference_source_conditional" token_reference_type="reference_type">
30 <conditional name="@REFERENCE_TYPE@_source">
31 <param name="reference_source_selector" type="select" label="Will you select a @REFERENCE_TYPE@ reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options. See `Indexes` section of help below">
32 <option value="cached">Use a built-in @REFERENCE_TYPE@ genome index</option>
33 <option value="history">Use a genome from history and build index</option>
34 </param>
35 <when value="cached">
36 <param name="ref_file" type="select" label="Using @REFERENCE_TYPE@ reference genome" help="Select @REFERENCE_TYPE@ genome from the list" optional="True">
37 <options from_data_table="bwa_mem_indexes">
38 <filter type="sort_by" column="2" />
39 <validator type="no_options" message="No indexes are available" />
40 </options>
41 <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/>
42 </param>
43 </when>
44 <when value="history">
45 <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the reference sequence" help="You can upload a FASTA sequence to the history and use it as reference" optional="True"/>
46 </when>
47 </conditional>
48 </xml>
29 </macros> 49 </macros>