Mercurial > repos > mvdbeek > bam_readtagger

comparison findcluster.xml @ 22:42fefb316c95 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 16f35b0e373f4cbd33f1bc6aef4a13b7fd2eca12-dirty
author mvdbeek
date Sun, 23 Apr 2017 15:58:53 -0400
parents 1c91108a80d5
children 1323ffbc8785
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21:1c91108a80d5 22:42fefb316c95
1 <tool id="findcluster" name="Find clusters of reads" version="0.3.15"> 1 <tool id="findcluster" name="Find clusters of reads" version="0.3.16">
2 <description>in bam files</description> 2 <description>in bam files</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.3.15">readtagger</requirement> 4 <requirement type="package" version="0.3.16">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>findcluster --version</version_command> 6 <version_command>findcluster --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -f -s $input input.bam && 8 ln -f -s $input input.bam &&
9 ln -f -s $input.metadata.bam_index input.bam.bai && 9 ln -f -s $input.metadata.bam_index input.bam.bai &&