Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 73:676b7ff2d899 draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit cfb6ee6e3587f19540eb97d9b761623728aa6ee8"
author mvdbeek
date Sat, 11 Jan 2020 16:20:59 -0500
parents 8ef26717ba8b
children 6c15dd4415ea
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72:8ef26717ba8b 73:676b7ff2d899
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.19"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.20">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.19">readtagger</requirement> 4 <requirement type="package" version="0.5.20">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output_alignment' reference.fa && 9 extract_variants '$input' '$output_alignment' reference.fa &&