Mercurial > repos > mvdbeek > bam_readtagger

comparison findcluster.xml @ 43:6f9b1b81b593 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 7ee4c1dd4e13a4d634b0e80efdd2309289a29a1c
author mvdbeek
date Fri, 26 Oct 2018 06:11:17 -0400
parents 4fdf606153df
children 4870f1d6f037
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42:5b8781514bc1 43:6f9b1b81b593
1 <tool id="findcluster" name="Find clusters of reads" version="0.4.11"> 1 <tool id="findcluster" name="Find clusters of reads" version="0.4.12">
2 <description>in bam files</description> 2 <description>in bam files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.4.11">readtagger</requirement> 7 <requirement type="package" version="0.4.12">readtagger</requirement>
8 </requirements> 8 </requirements>
9 <version_command>findcluster --version</version_command> 9 <version_command>findcluster --version</version_command>
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 #import re 11 #import re
12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier))