Mercurial > repos > mvdbeek > bam_readtagger

comparison findcluster.xml @ 48:72c9afb724a6 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit d71c7dbbf4deb4e3300e34a5c756f46cf7504888
author mvdbeek
date Sun, 10 Feb 2019 15:59:07 -0500
parents a4e30210fc3d
children f4344d943248
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47:a4e30210fc3d 48:72c9afb724a6
1 <tool id="findcluster" name="Find clusters of reads" version="0.4.16"> 1 <tool id="findcluster" name="Find clusters of reads" version="0.4.17">
2 <description>in bam files</description> 2 <description>in bam files</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.4.16">readtagger</requirement> 7 <requirement type="package" version="0.4.17">readtagger</requirement>
8 </requirements> 8 </requirements>
9 <version_command>findcluster --version</version_command> 9 <version_command>findcluster --version</version_command>
10 <command detect_errors="aggressive"><![CDATA[ 10 <command detect_errors="aggressive"><![CDATA[
11 #import re 11 #import re
12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier)) 12 #set sample_name = re.sub('[^\w\-_\.\,]', '_', str( $input.element_identifier))