Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 58:84f51c5d69e3 draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit e960132d33c2094fbe2dc21d0952867600766ba7"
author mvdbeek
date Tue, 27 Aug 2019 04:29:07 -0400
parents 38ae00c376ef
children 13c5f2e30a13
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57:38ae00c376ef 58:84f51c5d69e3
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.4"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.5">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.4">readtagger</requirement> 4 <requirement type="package" version="0.5.5">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output' reference.fa 9 extract_variants '$input' '$output' reference.fa