Mercurial > repos > mvdbeek > bam_readtagger

comparison extract_variants.xml @ 79:c42dd2551c9c draft

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"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit df2b1a906b8772810d995d7887e4e8f04aabc13a"
author mvdbeek
date Tue, 07 Apr 2020 13:41:14 -0400
parents 6178c24ddd5a
children
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78:6178c24ddd5a 79:c42dd2551c9c
1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.24"> 1 <tool id="extract_variants" name="Extract variant fragments" version="0.5.25">
2 <description>from long reads</description> 2 <description>from long reads</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.5.24">readtagger</requirement> 4 <requirement type="package" version="0.5.25">readtagger</requirement>
5 </requirements> 5 </requirements>
6 <version_command>extract_variants --version</version_command> 6 <version_command>extract_variants --version</version_command>
7 <command detect_errors="aggressive"><![CDATA[ 7 <command detect_errors="aggressive"><![CDATA[
8 ln -fs '$insert_reference.fields.path' reference.fa && 8 ln -fs '$insert_reference.fields.path' reference.fa &&
9 extract_variants '$input' '$output_alignment' reference.fa && 9 extract_variants '$input' '$output_alignment' reference.fa &&