Mercurial > repos > mvdbeek > bam_readtagger
diff findcluster.xml @ 19:97c1b92dbd28 draft
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit e3effe4ab3ded37fb610f53deb4d0082daf7fdac-dirty
author | mvdbeek |
---|---|
date | Wed, 05 Apr 2017 17:34:55 -0400 |
parents | 8fef53971086 |
children | 03415763c62c |
line wrap: on
line diff
--- a/findcluster.xml Mon Apr 03 09:42:31 2017 -0400 +++ b/findcluster.xml Wed Apr 05 17:34:55 2017 -0400 @@ -1,7 +1,7 @@ -<tool id="findcluster" name="Find clusters of reads" version="0.3.12"> +<tool id="findcluster" name="Find clusters of reads" version="0.3.13"> <description>in bam files</description> <requirements> - <requirement type="package" version="0.3.12">readtagger</requirement> + <requirement type="package" version="0.3.13">readtagger</requirement> </requirements> <version_command>findcluster --version</version_command> <command detect_errors="aggressive"><![CDATA[ @@ -14,6 +14,7 @@ #end if --output_bam '$output_bam' --output_gff '$output_gff' + --output_fasta '$output_fasta' --sample_name '$input.element_identifier' --threads "\${GALAXY_SLOTS:-2}" ]]></command> @@ -23,6 +24,7 @@ </inputs> <outputs> <data name="output_bam" format="bam" label="findcluster BAM on $on_string"/> + <data name="output_fasta" format="fasta" label="findcluster contigs on $on_string"/> <data name="output_gff" format="gff3" label="findcluster GFF on $on_string"/> </outputs> <tests>