Mercurial > repos > mvdbeek > bam_readtagger

diff add_matesequence.xml @ 28:be95c9c82937 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 9b9334bf4c0364e3e06e64a9b3e532d0b10f93ba-dirty
author mvdbeek
date Tue, 09 May 2017 10:38:06 -0400
parents 9f7737be4732
children 2c62ca47c455
line wrap: on
line diff
--- a/add_matesequence.xml	Fri Apr 28 02:16:42 2017 -0400
+++ b/add_matesequence.xml	Tue May 09 10:38:06 2017 -0400
@@ -1,11 +1,11 @@
-<tool id="add_matesequence" name="Add matesequence" version="0.3.21">
+<tool id="add_matesequence" name="Add matesequence" version="0.3.22">
     <description>into tag field</description>
     <requirements>
-        <requirement type="package" version="0.3.21">readtagger</requirement>
+        <requirement type="package" version="0.3.22">readtagger</requirement>
     </requirements>
     <version_command>add_matesequence --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
-        add_matesequence --file_to_annotate '$file_to_annotate' --annotate_source '$annotate_source' --output_path '$output'
+        add_matesequence --target '$file_to_annotate' --source '$annotate_source' --output_path '$output'
     ]]></command>
     <inputs>
         <param name="file_to_annotate" argument="--file_to_annotate" label="Annotate reads in this file with their mate sequence" type="data" format="bam"/>