Mercurial > repos > mvdbeek > bam_readtagger
diff plot_coverage.xml @ 79:c42dd2551c9c draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit df2b1a906b8772810d995d7887e4e8f04aabc13a"
author | mvdbeek |
---|---|
date | Tue, 07 Apr 2020 13:41:14 -0400 |
parents | 6178c24ddd5a |
children | c9361b7a025d |
line wrap: on
line diff
--- a/plot_coverage.xml Tue Apr 07 08:57:47 2020 -0400 +++ b/plot_coverage.xml Tue Apr 07 13:41:14 2020 -0400 @@ -1,7 +1,7 @@ -<tool id="plot_coverage" name="Plot coverage" version="0.5.24"> +<tool id="plot_coverage" name="Plot coverage" version="0.5.25"> <description>as area plot between BAM files</description> <requirements> - <requirement type="package" version="0.5.24">readtagger</requirement> + <requirement type="package" version="0.5.25">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ #import re @@ -10,7 +10,7 @@ #set identifier = re.sub('[^\w\-_\.\,]', '_', str( $r.input.element_identifier)) --file '$r.input' '$identifier' $r.total_reads #end for -output.pdf --cores \${GALAXY_SLOTS:-4} --regions '$regions' --plot_kind $plot_kind +output.pdf --cores \${GALAXY_SLOTS:-4} --regions '$regions' --plot_kind $plot_kind --style $style ]]></command> <inputs> <repeat name="input_files" title="Add input files to coverage plot" min="1"> @@ -31,6 +31,29 @@ <option value="area">Area plot</option> <option value="line">Line plot</option> </param> + <param name="style" type="select" label="Select a plotting style"> + <option value="ggplot">ggplot</option> + <option value="classic">classic</option> + <option value="greyscale">greyscale</option> + <option value="dark_background">dark_background</option> + <option value="seaborn">seaborn</option> + <option value="seaborn-bright">seaborn-bright</option> + <option value="seaborn-colorblind">seaborn-colorblind</option> + <option value="seaborn-dark">seaborn-dark</option> + <option value="seaborn-dark-palette">seaborn-dark-palette</option> + <option value="seaborn-darkgrid">seaborn-darkgrid</option> + <option value="seaborn-deep">seaborn-deep</option> + <option value="seaborn-muted">seaborn-muted</option> + <option value="seaborn-notebook">seaborn-notebook</option> + <option value="seaborn-paper">seaborn-paper</option> + <option value="seaborn-pastel">seaborn-pastel</option> + <option value="seaborn-poster">seaborn-poster</option> + <option value="seaborn-talk">seaborn-talk</option> + <option value="seaborn-ticks">seaborn-ticks</option> + <option value="seaborn-white">seaborn-white</option> + <option value="seaborn-whitegrid">seaborn-whitegrid</option> + <option value="tableau-colorblind10">tableau-colorblind10</option> + </param> </inputs> <outputs> <data name="output" format="pdf" label="Coverage plot on $on_string" from_work_dir="output.pdf"/>