Mercurial > repos > mvdbeek > bam_readtagger

diff allow_dovetailing.xml @ 3:cb9036583afe draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit e9d18b939a9172b858c178e6bb4ef9ce2138c94c-dirty
author mvdbeek
date Tue, 21 Feb 2017 04:39:31 -0500
parents 39d9bc17ec74
children 7625c594bc37
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line diff
--- a/allow_dovetailing.xml	Fri Feb 17 12:55:58 2017 -0500
+++ b/allow_dovetailing.xml	Tue Feb 21 04:39:31 2017 -0500
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.1.13">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.2.0">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.1.13">readtagger</requirement>
+        <requirement type="package" version="0.2.0">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
@@ -19,16 +19,17 @@
         </test>
     </tests>
     <help><![CDATA[
-::
-usage: allow_dovetailing [-h] -i INPUT_PATH -o OUTPUT_PATH
+.. code-block::
 
-Allow dovetailing.
+    usage: allow_dovetailing [-h] -i INPUT_PATH -o OUTPUT_PATH
+
+    Allow dovetailing.
 
-optional arguments:
-  -h, --help            show this help message and exit
-  -i INPUT_PATH, --input_path INPUT_PATH
-                        Input alignment file to manipulate
-  -o OUTPUT_PATH, --output_path OUTPUT_PATH
-                        Output alignment file
+    optional arguments:
+      -h, --help            show this help message and exit
+      -i INPUT_PATH, --input_path INPUT_PATH
+                            Input alignment file to manipulate
+      -o OUTPUT_PATH, --output_path OUTPUT_PATH
+                            Output alignment file
     ]]></help>
 </tool>