Mercurial > repos > mvdbeek > bam_readtagger
view macros.xml @ 62:16eba798cbc6 draft
"planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 20d187a08a5c511cb38e7e60aeadfc2962dc03d3"
author | mvdbeek |
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date | Sat, 31 Aug 2019 09:48:36 -0400 |
parents | 301316cb596a |
children |
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<macros> <xml name="tag_options"> <option value="A">A</option> <option value="B">B</option> <option value="C">C</option> <option value="D">D</option> <option value="E">E</option> <option value="F">F</option> <option value="G">G</option> <option value="H">H</option> <option value="I">I</option> <option value="J">J</option> <option value="K">K</option> <option value="L">L</option> <option value="M">M</option> <option value="N">N</option> <option value="O">O</option> <option value="P">P</option> <option value="Q">Q</option> <option value="R">R</option> <option value="S">S</option> <option value="T">T</option> <option value="U">U</option> <option value="V">V</option> <option value="W">W</option> <option value="X">X</option> <option value="Y">Y</option> </xml> <xml name="reference_source_conditional" token_reference_type="reference_type"> <conditional name="@REFERENCE_TYPE@_source"> <param name="reference_source_selector" type="select" label="Will you select a @REFERENCE_TYPE@ reference genome from your history or use a built-in index?" help="Built-ins were indexed using default options. See `Indexes` section of help below"> <option value="cached">Use a built-in @REFERENCE_TYPE@ genome index</option> <option value="history">Use a genome from history and build index</option> </param> <when value="cached"> <param name="ref_file" type="select" label="Using @REFERENCE_TYPE@ reference genome" help="Select @REFERENCE_TYPE@ genome from the list" optional="True"> <options from_data_table="bwa_mem_indexes"> <filter type="sort_by" column="2" /> <validator type="no_options" message="No indexes are available" /> </options> <validator type="no_options" message="A built-in reference genome is not available for the build associated with the selected input file"/> </param> </when> <when value="history"> <param name="ref_file" type="data" format="fasta" label="Use the following dataset as the reference sequence" help="You can upload a FASTA sequence to the history and use it as reference" optional="True"/> </when> </conditional> </xml> </macros>