Mercurial > repos > mvdbeek > bam_readtagger

view test.sh @ 3:cb9036583afe draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit e9d18b939a9172b858c178e6bb4ef9ce2138c94c-dirty
author mvdbeek
date Tue, 21 Feb 2017 04:39:31 -0500
parents a38447a59412
children
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#!/usr/bin/env bash

set -e

if grep -v 'python tag_reads.py' bam_tag_reads.xml
then
    sed -i.bak 's/tag_reads -t/python \$__tool_directory__\/tag_reads.py -t/g' bam_tag_reads.xml
fi
cp ../tag_reads/tag_reads.py .
planemo test --conda_prefix ~/miniconda3