# HG changeset patch
# User mvdbeek
# Date 1515241285 18000
# Node ID 93f7962a3e19506bfb0dc33a76b59b2de1024fc7
# Parent  d0b3329a8e4bfc4077ed47bca608154b939d7890
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 8e9ede772dcffc699ffd4bf0cfd83abae29b0a01-dirty

diff -r d0b3329a8e4b -r 93f7962a3e19 add_matesequence.xml
--- a/add_matesequence.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/add_matesequence.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,7 +1,7 @@
-<tool id="add_matesequence" name="Add matesequence" version="0.4.5">
+<tool id="add_matesequence" name="Add matesequence" version="0.4.6">
     <description>into tag field</description>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <version_command>add_matesequence --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
diff -r d0b3329a8e4b -r 93f7962a3e19 allow_dovetailing.xml
--- a/allow_dovetailing.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/allow_dovetailing.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.4.5">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.4.6">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
diff -r d0b3329a8e4b -r 93f7962a3e19 bam_readtagger.xml
--- a/bam_readtagger.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/bam_readtagger.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.4.5">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.4.6">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -s
diff -r d0b3329a8e4b -r 93f7962a3e19 findcluster.xml
--- a/findcluster.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/findcluster.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,10 +1,10 @@
-<tool id="findcluster" name="Find clusters of reads" version="0.4.5">
+<tool id="findcluster" name="Find clusters of reads" version="0.4.6">
     <description>in bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <version_command>findcluster --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
diff -r d0b3329a8e4b -r 93f7962a3e19 plot_coverage.xml
--- a/plot_coverage.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/plot_coverage.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,7 +1,7 @@
-<tool id="plot_coverage" name="Plot coverage" version="0.4.5">
+<tool id="plot_coverage" name="Plot coverage" version="0.4.6">
     <description>as area plot between BAM files</description>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         #import re
diff -r d0b3329a8e4b -r 93f7962a3e19 update_mapq.xml
--- a/update_mapq.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/update_mapq.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,7 +1,7 @@
-<tool id="update_mapq" name="Update MAPQ score" version="0.4.5">
+<tool id="update_mapq" name="Update MAPQ score" version="0.4.6">
     <description>of supplementary alignments</description>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <version_command>update_mapq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
diff -r d0b3329a8e4b -r 93f7962a3e19 write_supplementary_fastq.xml
--- a/write_supplementary_fastq.xml	Thu Dec 14 09:15:41 2017 -0500
+++ b/write_supplementary_fastq.xml	Sat Jan 06 07:21:25 2018 -0500
@@ -1,7 +1,7 @@
-<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.4.5">
+<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.4.6">
     <description>from SAM/BAM alignment files as FASTQ</description>
     <requirements>
-        <requirement type="package" version="0.4.5">readtagger</requirement>
+        <requirement type="package" version="0.4.6">readtagger</requirement>
     </requirements>
     <version_command>write_supplementary_fastq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[