# HG changeset patch
# User mvdbeek
# Date 1498053468 14400
# Node ID bf3d04937095472f5e58f25236c6d074cb19b0f6
# Parent  301316cb596a6e5e1f40765d1ce969cbadabc1e3
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 0291e13a331e921ff4c5c1859c83cd6f3a8f5f5d

diff -r 301316cb596a -r bf3d04937095 deploy.sh
diff -r 301316cb596a -r bf3d04937095 findcluster.xml
--- a/findcluster.xml	Wed Jun 21 09:38:25 2017 -0400
+++ b/findcluster.xml	Wed Jun 21 09:57:48 2017 -0400
@@ -16,14 +16,14 @@
             #if str($transposon_source.reference_source_selector) == "history":
                 --transposon_reference_fasta '$transposon_source.ref_file'
             #else :
-                --transposon_bwa_index '$reference_source.ref_file.fields.path'
+                --transposon_bwa_index '$transposon_source.ref_file.fields.path'
             #end if
         #end if
         #if $genome_source.ref_file:
             #if str($genome_source.reference_source_selector) == "history":
                 --genome_reference_fasta '$genome_source.ref_file'
             #else :
-                --genome_bwa_index '$reference_source.ref_file.fields.path'
+                --genome_bwa_index '$genome_source.ref_file.fields.path'
             #end if
         #end if
         --output_bam '$output_bam'