Mercurial > repos > mvdbeek > bam_readtagger

changeset 26:1d71664174d9 draft

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planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit 9ba06fd25d74ae549996a2f0e69476f784398b79-dirty
author mvdbeek
date Thu, 27 Apr 2017 17:53:58 -0400
parents 6492af8015a6
children 9f7737be4732
files add_matesequence.xml allow_dovetailing.xml bam_readtagger.xml findcluster.xml update_mapq.xml write_supplementary_fastq.xml
diffstat 6 files changed, 12 insertions(+), 12 deletions(-) [+]
line wrap: on
line diff
--- a/add_matesequence.xml	Thu Apr 27 08:48:21 2017 -0400
+++ b/add_matesequence.xml	Thu Apr 27 17:53:58 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="add_matesequence" name="Add matesequence" version="0.3.19">
+<tool id="add_matesequence" name="Add matesequence" version="0.3.20">
     <description>into tag field</description>
     <requirements>
-        <requirement type="package" version="0.3.19">readtagger</requirement>
+        <requirement type="package" version="0.3.20">readtagger</requirement>
     </requirements>
     <version_command>add_matesequence --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
--- a/allow_dovetailing.xml	Thu Apr 27 08:48:21 2017 -0400
+++ b/allow_dovetailing.xml	Thu Apr 27 17:53:58 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.19">
+<tool id="allow_dovetailing" name="Allow dovetailing" version="0.3.20">
     <description>modifies proper_pair flag in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.19">readtagger</requirement>
+        <requirement type="package" version="0.3.20">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         allow_dovetailing -i '$input' -o '$output'
--- a/bam_readtagger.xml	Thu Apr 27 08:48:21 2017 -0400
+++ b/bam_readtagger.xml	Thu Apr 27 17:53:58 2017 -0400
@@ -1,10 +1,10 @@
-<tool id="bam_readtagger" name="Tag alignment files" version="0.3.19">
+<tool id="bam_readtagger" name="Tag alignment files" version="0.3.20">
     <description>from multiple bam files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <requirements>
-        <requirement type="package" version="0.3.19">readtagger</requirement>
+        <requirement type="package" version="0.3.20">readtagger</requirement>
     </requirements>
     <command detect_errors="aggressive"><![CDATA[
         readtagger -t '$tag_file' -a
--- a/findcluster.xml	Thu Apr 27 08:48:21 2017 -0400
+++ b/findcluster.xml	Thu Apr 27 17:53:58 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="findcluster" name="Find clusters of reads" version="0.3.19">
+<tool id="findcluster" name="Find clusters of reads" version="0.3.20">
     <description>in bam files</description>
     <requirements>
-        <requirement type="package" version="0.3.19">readtagger</requirement>
+        <requirement type="package" version="0.3.20">readtagger</requirement>
     </requirements>
     <version_command>findcluster --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
--- a/update_mapq.xml	Thu Apr 27 08:48:21 2017 -0400
+++ b/update_mapq.xml	Thu Apr 27 17:53:58 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="update_mapq" name="Update MAPQ score" version="0.3.19">
+<tool id="update_mapq" name="Update MAPQ score" version="0.3.20">
     <description>of supplementary alignments</description>
     <requirements>
-        <requirement type="package" version="0.3.19">readtagger</requirement>
+        <requirement type="package" version="0.3.20">readtagger</requirement>
     </requirements>
     <version_command>update_mapq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[
--- a/write_supplementary_fastq.xml	Thu Apr 27 08:48:21 2017 -0400
+++ b/write_supplementary_fastq.xml	Thu Apr 27 17:53:58 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.3.19">
+<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.3.20">
     <description>from SAM/BAM alignment files as FASTQ</description>
     <requirements>
-        <requirement type="package" version="0.3.19">readtagger</requirement>
+        <requirement type="package" version="0.3.20">readtagger</requirement>
     </requirements>
     <version_command>write_supplementary_fastq --version</version_command>
     <command detect_errors="aggressive"><![CDATA[