Mercurial > repos > mvdbeek > damid_deseq2_to_peaks
comparison damid_deseq2_to_peaks.xml @ 0:3fd7995da4fd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damid_deseq2_to_peaks commit f37f4b741fd81f663d10523e1636039578c5bb55
| author | mvdbeek |
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| date | Mon, 07 Jan 2019 12:58:55 -0500 |
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| -1:000000000000 | 0:3fd7995da4fd |
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| 1 <tool id="damid_deseq2_to_peaks" name="DamID deseq2 to peaks" version="0.1.0"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="7">click</requirement> | |
| 4 <requirement type="package" version="0.23.4">pandas</requirement> | |
| 5 </requirements> | |
| 6 <command detect_errors="exit_code"><![CDATA[ | |
| 7 python '$__tool_directory__/damid_deseq2_to_peaks.py' '$input' '$output' --p_value_cutoff $p_value_cutoff | |
| 8 ]]></command> | |
| 9 <inputs> | |
| 10 <param name="input" type="data" format="tabular" label="Select DESeq2 result file for GATC sites"/> | |
| 11 <param argument="p_value_cutoff" type="float" value="0.01" min="0" max="1" label="Select minimum p-value to consider a GATC significantly bound"/> | |
| 12 </inputs> | |
| 13 <outputs> | |
| 14 <data name="output" format="bed"/> | |
| 15 </outputs> | |
| 16 <tests> | |
| 17 <test> | |
| 18 <param name="input" value="test_data.tab"/> | |
| 19 <output name="output" value="peaks.bed"/> | |
| 20 </test> | |
| 21 </tests> | |
| 22 <help><![CDATA[ | |
| 23 Converts a deseq2 GATC result file into peaks in bed format. | |
| 24 ]]></help> | |
| 25 </tool> |