comparison log @ 5:29f82a5c7966 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
author mvdbeek
date Fri, 20 Apr 2018 05:11:06 -0400
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comparison
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4:5a56b400df93 5:29f82a5c7966
1 Simple FDR random permutation peak caller
2 Usage: [options] [files in bedgraph or GFF format]
3
4 Options:
5 --fdr False discovery rate value
6 [Current value: 0.01]
7 --frac Number of random fragments to consider per iteration
8 --min_count Minimum number of fragments to consider as a peak
9 [Current value: 2]
10 --min_quant Minimum quantile for considering peaks
11 [Current value: 0.95]
12 --n Number of iterations
13 [Current value: 100]
14 --step Stepping for quantiles
15 [Current value: 0.01]
16 --unified_peaks Method for calling peak overlaps (two options):
17 'min': call minimum overlapping peak area
18 'max': call maximum overlap as peak
19 [Current value: max]
20