Mercurial > repos > mvdbeek > damidseq_findpeaks
comparison log @ 5:29f82a5c7966 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/damidseq_findpeaks commit 11875bd02ef0c27b5efa25ba5e256c530117e80a-dirty
| author | mvdbeek |
|---|---|
| date | Fri, 20 Apr 2018 05:11:06 -0400 |
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| children |
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| 4:5a56b400df93 | 5:29f82a5c7966 |
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| 1 Simple FDR random permutation peak caller | |
| 2 Usage: [options] [files in bedgraph or GFF format] | |
| 3 | |
| 4 Options: | |
| 5 --fdr False discovery rate value | |
| 6 [Current value: 0.01] | |
| 7 --frac Number of random fragments to consider per iteration | |
| 8 --min_count Minimum number of fragments to consider as a peak | |
| 9 [Current value: 2] | |
| 10 --min_quant Minimum quantile for considering peaks | |
| 11 [Current value: 0.95] | |
| 12 --n Number of iterations | |
| 13 [Current value: 100] | |
| 14 --step Stepping for quantiles | |
| 15 [Current value: 0.01] | |
| 16 --unified_peaks Method for calling peak overlaps (two options): | |
| 17 'min': call minimum overlapping peak area | |
| 18 'max': call maximum overlap as peak | |
| 19 [Current value: max] | |
| 20 |